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Protein

50S ribosomal protein L25

Gene

rplY

Organism
Staphylococcus aureus (strain NCTC 8325)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationSAAS annotation, RNA-binding, rRNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25UniRule annotationSAAS annotation
Alternative name(s):
General stress protein CTCUniRule annotationSAAS annotation
Gene namesi
Name:rplYUniRule annotation
Synonyms:ctcUniRule annotation
Ordered Locus Names:SAOUHSC_00474Imported
OrganismiStaphylococcus aureus (strain NCTC 8325)Imported
Taxonomic identifieri93061 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000008816 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi93061.SAOUHSC_00474.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4WCEX-ray3.53S1-217[»]
4WFBX-ray3.43S1-217[»]
5HKVX-ray3.66S1-217[»]
5HL7X-ray3.55S1-217[»]
5LI0electron microscopy3.80Y3-96[»]
5ND8electron microscopy3.70Y1-217[»]
5ND9electron microscopy3.70Y1-217[»]
5NRGX-ray3.44S1-217[»]
5TCUelectron microscopy3.90L83-95[»]
ProteinModelPortaliQ2G0S0.
SMRiQ2G0S0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini101 – 181Ribosomal_TL5_CInterPro annotationAdd BLAST81

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105KW6. Bacteria.
COG1825. LUCA.
HOGENOMiHOG000214906.
KOiK02897.
OMAiGDSIHIS.

Family and domain databases

CDDicd00495. Ribosomal_L25_TL5_CTC. 1 hit.
Gene3Di2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPiMF_01334. Ribosomal_L25_CTC. 1 hit.
InterProiView protein in InterPro
IPR020056. Rbsml_L25/Gln-tRNA_synth_N.
IPR029751. Ribosomal_L25.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR037121. Ribosomal_L25_C.
IPR001021. Ribosomal_L25_long.
PfamiView protein in Pfam
PF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD012503. Ribosomal_L25. 1 hit.
SUPFAMiSSF50715. SSF50715. 1 hit.
TIGRFAMsiTIGR00731. bL25_bact_ctc. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2G0S0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASLKSIIRQ GKQTRSDLKQ LRKSGKVPAV VYGYGTKNVS VKVDEVEFIK
60 70 80 90 100
VIREVGRNGV IELGVGSKTI KVMVADYQFD PLKNQITHID FLAINMSEER
110 120 130 140 150
TVEVPVQLVG EAVGAKEGGV VEQPLFNLEV TATPDNIPEA IEVDITELNI
160 170 180 190 200
NDSLTVADVK VTGDFKIEND SAESVVTVVA PTEEPTEEEI EAMEGEQQTE
210
EPEVVGESKE DEEKTEE
Length:217
Mass (Da):23,788
Last modified:March 21, 2006 - v1
Checksum:i1F6A316EA0A45108
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000253 Genomic DNA. Translation: ABD29629.1.
RefSeqiWP_000157650.1. NC_007795.1.
YP_499053.1. NC_007795.1.

Genome annotation databases

EnsemblBacteriaiABD29629; ABD29629; SAOUHSC_00474.
GeneIDi31213290.
3920334.
KEGGisao:SAOUHSC_00474.
PATRICifig|93061.5.peg.428.

Similar proteinsi

Entry informationi

Entry nameiQ2G0S0_STAA8
AccessioniPrimary (citable) accession number: Q2G0S0
Entry historyiIntegrated into UniProtKB/TrEMBL: March 21, 2006
Last sequence update: March 21, 2006
Last modified: November 22, 2017
This is version 87 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported