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Protein

50S ribosomal protein L20

Gene

rplT

Organism
Staphylococcus aureus (strain NCTC 8325)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L20UniRule annotation
Gene namesi
Name:rplTUniRule annotation
Ordered Locus Names:SAOUHSC_01784
OrganismiStaphylococcus aureus (strain NCTC 8325)
Taxonomic identifieri93061 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000008816 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000490811 – 11850S ribosomal protein L20Add BLAST118

Interactioni

Protein-protein interaction databases

STRINGi93061.SAOUHSC_01784.

Structurei

Secondary structure

1118
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi8 – 10Combined sources3
Helixi11 – 20Combined sources10
Helixi26 – 29Combined sources4
Helixi32 – 70Combined sources39
Turni71 – 73Combined sources3
Helixi76 – 85Combined sources10
Helixi92 – 101Combined sources10
Helixi103 – 114Combined sources12

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4WCEX-ray3.53N1-118[»]
4WF9X-ray3.43N1-118[»]
4WFAX-ray3.39N1-118[»]
4WFBX-ray3.43N1-118[»]
5HKVX-ray3.66N1-118[»]
5HL7X-ray3.55N1-118[»]
5LI0electron microscopy3.80T2-117[»]
5ND8electron microscopy3.70T1-118[»]
5ND9electron microscopy3.70T1-118[»]
5NRGX-ray3.44N1-118[»]
5TCUelectron microscopy3.90L32-117[»]
ProteinModelPortaliQ2FXQ1.
SMRiQ2FXQ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the bacterial ribosomal protein bL20 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108YZX. Bacteria.
COG0292. LUCA.
HOGENOMiHOG000035046.
KOiK02887.
OMAiDLAMNHP.

Family and domain databases

CDDicd07026. Ribosomal_L20. 1 hit.
Gene3Di1.10.1900.20. 1 hit.
HAMAPiMF_00382. Ribosomal_L20. 1 hit.
InterProiView protein in InterPro
IPR005813. Ribosomal_L20.
IPR035566. Ribosomal_protein_L20_C.
PANTHERiPTHR10986. PTHR10986. 1 hit.
PfamiView protein in Pfam
PF00453. Ribosomal_L20. 1 hit.
PRINTSiPR00062. RIBOSOMALL20.
SUPFAMiSSF74731. SSF74731. 1 hit.
TIGRFAMsiTIGR01032. rplT_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00937. RIBOSOMAL_L20. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2FXQ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRVKGGTVT RARRKKTIKL AKGYFGSKHT LYKVAKQQVM KSGQYAFRDR
60 70 80 90 100
RQRKRDFRKL WITRINAAAR QHEMSYSRLM NGLKKAGIDI NRKMLSEIAI
110
SDEKAFAQLV TKAKDALK
Length:118
Mass (Da):13,686
Last modified:March 21, 2006 - v1
Checksum:i108789019A553B89
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000253 Genomic DNA. Translation: ABD30853.1.
RefSeqiWP_001138360.1. NC_007795.1.
YP_500289.1. NC_007795.1.

Genome annotation databases

EnsemblBacteriaiABD30853; ABD30853; SAOUHSC_01784.
GeneIDi31214581.
3920426.
KEGGisao:SAOUHSC_01784.
PATRICifig|93061.5.peg.1626.

Similar proteinsi

Entry informationi

Entry nameiRL20_STAA8
AccessioniPrimary (citable) accession number: Q2FXQ1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: March 21, 2006
Last modified: November 22, 2017
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families