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Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Staphylococcus aureus (strain NCTC 8325)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciSAUR93061:G1G5Y-2351-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13UniRule annotation
Gene namesi
Name:rpsMUniRule annotation
Ordered Locus Names:SAOUHSC_02487
OrganismiStaphylococcus aureus (strain NCTC 8325)
Taxonomic identifieri93061 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000008816 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003067151 – 12130S ribosomal protein S13Add BLAST121

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi93061.SAOUHSC_02487

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
5LI0electron microscopy3.80m2-120[»]
5ND8electron microscopy3.70m1-121[»]
5ND9electron microscopy3.70m1-121[»]
5TCUelectron microscopy3.90S42-114[»]
ProteinModelPortaliQ2FW30
SMRiQ2FW30
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uS13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108Z04 Bacteria
COG0099 LUCA
HOGENOMiHOG000039879
KOiK02952
OMAiRTKNNSR

Family and domain databases

Gene3Di4.10.910.10, 1 hit
HAMAPiMF_01315 Ribosomal_S13_S18, 1 hit
InterProiView protein in InterPro
IPR027437 30s_Rbsml_prot_S13_C
IPR001892 Ribosomal_S13
IPR010979 Ribosomal_S13-like_H2TH
IPR019980 Ribosomal_S13_bac-type
IPR018269 Ribosomal_S13_CS
PANTHERiPTHR10871:SF1 PTHR10871:SF1, 1 hit
PfamiView protein in Pfam
PF00416 Ribosomal_S13, 1 hit
PIRSFiPIRSF002134 Ribosomal_S13, 1 hit
SUPFAMiSSF46946 SSF46946, 1 hit
TIGRFAMsiTIGR03631 uS13_bact, 1 hit
PROSITEiView protein in PROSITE
PS00646 RIBOSOMAL_S13_1, 1 hit
PS50159 RIBOSOMAL_S13_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q2FW30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARIAGVDIP REKRVVISLT YIYGIGTSTA QKILEEANVS ADTRVKDLTD
60 70 80 90 100
DELGRIREVV DGYKVEGDLR RETNLNIKRL MEISSYRGIR HRRGLPVRGQ
110 120
KTKNNARTRK GPVKTVANKK K
Length:121
Mass (Da):13,719
Last modified:March 21, 2006 - v1
Checksum:i4223639C52DA5FD8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000253 Genomic DNA Translation: ABD31506.1
RefSeqiWP_000090796.1, NC_007795.1
YP_500955.1, NC_007795.1

Genome annotation databases

EnsemblBacteriaiABD31506; ABD31506; SAOUHSC_02487
GeneIDi3920864
KEGGisao:SAOUHSC_02487
PATRICifig|93061.5.peg.2243

Similar proteinsi

Entry informationi

Entry nameiRS13_STAA8
AccessioniPrimary (citable) accession number: Q2FW30
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: March 21, 2006
Last modified: March 28, 2018
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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