Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L16

Gene

rplP

Organism
Staphylococcus aureus (strain NCTC 8325)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding, tRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16UniRule annotation
Gene namesi
Name:rplPUniRule annotation
Ordered Locus Names:SAOUHSC_02505
OrganismiStaphylococcus aureus (strain NCTC 8325)
Taxonomic identifieri93061 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000008816 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002516751 – 14450S ribosomal protein L16Add BLAST144

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi93061.SAOUHSC_02505.

Structurei

Secondary structure

1144
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi29 – 36Combined sources8
Beta strandi40 – 43Combined sources4
Helixi44 – 57Combined sources14
Beta strandi63 – 65Combined sources3
Beta strandi72 – 74Combined sources3
Beta strandi92 – 97Combined sources6
Beta strandi102 – 109Combined sources8
Helixi111 – 122Combined sources12
Beta strandi125 – 127Combined sources3
Beta strandi129 – 134Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4WCEX-ray3.53J1-144[»]
4WF9X-ray3.43J1-144[»]
4WFAX-ray3.39J1-144[»]
4WFBX-ray3.43J1-144[»]
5HKVX-ray3.66J1-144[»]
5HL7X-ray3.55J1-144[»]
5LI0electron microscopy3.80P1-141[»]
5ND8electron microscopy3.70P1-144[»]
5ND9electron microscopy3.70P1-144[»]
5NRGX-ray3.44J1-144[»]
5TCUelectron microscopy3.90LP1-136[»]
ProteinModelPortaliQ2FW13.
SMRiQ2FW13.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL16 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R70. Bacteria.
COG0197. LUCA.
HOGENOMiHOG000164573.
KOiK02878.
OMAiKGAVEYW.

Family and domain databases

CDDicd01433. Ribosomal_L16_L10e. 1 hit.
Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16. 1 hit.
InterProiView protein in InterPro
IPR016180. Ribosomal_L10e/L16.
IPR036920. Ribosomal_L10e/L16_sf.
IPR000114. Ribosomal_L16.
IPR020798. Ribosomal_L16_CS.
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiView protein in Pfam
PF00252. Ribosomal_L16. 1 hit.
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00586. RIBOSOMAL_L16_1. 1 hit.
PS00701. RIBOSOMAL_L16_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2FW13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLPKRVKYR RQHRPKTTGR SKGGNYVTFG EFGLQATTTS WITSRQIESA
60 70 80 90 100
RIAMTRYMKR GGKVWIKIFP HTPYTKKPLE VRMGAGKGAV EGWIAVVKPG
110 120 130 140
RILFEVAGVS EEVAREALRL ASHKLPVKTK FVKREELGGE TNES
Length:144
Mass (Da):16,242
Last modified:March 21, 2006 - v1
Checksum:i27B45FD1C2540213
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000253 Genomic DNA. Translation: ABD31523.1.
RefSeqiWP_000926310.1. NC_007795.1.
YP_500972.1. NC_007795.1.

Genome annotation databases

EnsemblBacteriaiABD31523; ABD31523; SAOUHSC_02505.
GeneIDi3920881.
KEGGisao:SAOUHSC_02505.
PATRICifig|93061.5.peg.2260.

Similar proteinsi

Entry informationi

Entry nameiRL16_STAA8
AccessioniPrimary (citable) accession number: Q2FW13
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: March 21, 2006
Last modified: October 25, 2017
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families