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Protein

Putative HTH-type transcriptional regulatory protein Mhun_2548

Gene

Mhun_2548

Organism
Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi143 – 16220H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciMHUN323259:GH0L-2585-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulatory protein Mhun_2548UniRule annotation
Gene namesi
Ordered Locus Names:Mhun_2548
OrganismiMethanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
Taxonomic identifieri323259 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanomicrobialesMethanospirillaceaeMethanospirillum
Proteomesi
  • UP000001941 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 306306Putative HTH-type transcriptional regulatory protein Mhun_2548PRO_0000259361Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi323259.Mhun_2548.

Structurei

3D structure databases

ProteinModelPortaliQ2FTM0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini132 – 18958HTH cro/C1-typeUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiSERCNIR.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2FTM0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQDRLLRNV ISVMIMAGYE VSEVFAMRPK SFDIIAGNGE RIVVLKVISH
60 70 80 90 100
IDSISEENAR DLDRIARNLD GTPLIVGERA RDAELERGAV YVRYGIFAIN
110 120 130 140 150
YPTLHDYFVE DSPPLIYASP GGLYVNISGE RLRELRETRS LSLGDLGQIL
160 170 180 190 200
GVSRRTVAKY EAGMGTTIEI ALRIEETFDS GVIEPIDLIQ SKSQFTKPEM
210 220 230 240 250
PEVPEEIPIQ AAIEEMGMHV QPMYHAPFQA LVRYDSHTIL TGYGSAQKVA
260 270 280 290 300
RRAGIIGNIS QVTRTHAMCV MTDDQRQRRI GRTLMIGEDS LLSLDEPDDL

INLILN
Length:306
Mass (Da):34,191
Last modified:March 21, 2006 - v1
Checksum:iFED7D96C8F536B0D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000254 Genomic DNA. Translation: ABD42247.1.
RefSeqiWP_011449504.1. NC_007796.1.

Genome annotation databases

EnsemblBacteriaiABD42247; ABD42247; Mhun_2548.
GeneIDi3922492.
KEGGimhu:Mhun_2548.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000254 Genomic DNA. Translation: ABD42247.1.
RefSeqiWP_011449504.1. NC_007796.1.

3D structure databases

ProteinModelPortaliQ2FTM0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323259.Mhun_2548.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD42247; ABD42247; Mhun_2548.
GeneIDi3922492.
KEGGimhu:Mhun_2548.

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiSERCNIR.

Enzyme and pathway databases

BioCyciMHUN323259:GH0L-2585-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27890 / DSM 864 / NBRC 100397 / JF-1.

Entry informationi

Entry nameiY2548_METHJ
AccessioniPrimary (citable) accession number: Q2FTM0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: March 21, 2006
Last modified: November 11, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.