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Q2FS97 (IF6_METHJ) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Translation initiation factor 6

Short name=aIF-6
Gene names
Name:eif6
Ordered Locus Names:Mhun_3020
OrganismMethanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) [Reference proteome] [HAMAP]
Taxonomic identifier323259 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaMethanomicrobiaMethanomicrobialesMethanospirillaceaeMethanospirillum

Protein attributes

Sequence length221 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex By similarity. HAMAP-Rule MF_00032

Sequence similarities

Belongs to the eIF-6 family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Molecular functionInitiation factor
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processmature ribosome assembly

Inferred from electronic annotation. Source: InterPro

   Molecular_functionribosome binding

Inferred from electronic annotation. Source: InterPro

translation initiation factor activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 221221Translation initiation factor 6 HAMAP-Rule MF_00032
PRO_0000259431

Sequences

Sequence LengthMass (Da)Tools
Q2FS97 [UniParc].

Last modified March 21, 2006. Version 1.
Checksum: 24D7E3CADEC1F112

FASTA22123,654
        10         20         30         40         50         60 
MDRFVSIAGD PHIGVFTRVF DDIAVVPPDV PEEVTTRYEE ALKVEIVRTT IQRSPIIGSL 

        70         80         90        100        110        120 
LVGNNNGLVI TGMATEEEIA TLSEYRDLML LEEGMNAAGN IILANDHFAA VHPEMDEEFM 

       130        140        150        160        170        180 
DALSDFLKVP VIPLTLGDVK TVGMAAVATN SGVVVSPRTT PGEIQRLEQV CSLPVGKGTV 

       190        200        210        220 
TMGNAMVGTG LVANRYGYLA GVGTSGYELG RIEDILGFEE E 

« Hide

References

[1]"Complete sequence of Methanospirillum hungatei JF-1."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. expand/collapse author list , Kyrpides N., Ivanova N., McInerney M.J., Brockman F., Culley D., Ferry J.G., Gunsalus R.P., Morrison M., Plugge C., Scholten J., Stams A.J.M., Boone D.R., Richardson P.
Submitted (JAN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27890 / DSM 864 / NBRC 100397 / JF-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000254 Genomic DNA. Translation: ABD42707.1.
RefSeqYP_504426.1. NC_007796.1.

3D structure databases

ProteinModelPortalQ2FS97.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING323259.Mhun_3020.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD42707; ABD42707; Mhun_3020.
GeneID3922842.
KEGGmhu:Mhun_3020.

Phylogenomic databases

eggNOGCOG1976.
HOGENOMHOG000230604.
KOK03264.
OMANDWCAFT.
ProtClustDBPRK04046.

Enzyme and pathway databases

BioCycMHUN323259:GH0L-3065-MONOMER.

Family and domain databases

HAMAPMF_00032. eIF_6.
InterProIPR002769. eIF6.
[Graphical view]
PANTHERPTHR10784. PTHR10784. 1 hit.
PfamPF01912. eIF-6. 1 hit.
[Graphical view]
PIRSFPIRSF006413. IF-6. 1 hit.
SMARTSM00654. eIF6. 1 hit.
[Graphical view]
TIGRFAMsTIGR00323. eIF-6. 1 hit.
ProtoNetSearch...

Entry information

Entry nameIF6_METHJ
AccessionPrimary (citable) accession number: Q2FS97
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: March 21, 2006
Last modified: February 19, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Translation initiation factors

List of translation initiation factor entries