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Protein

Translation initiation factor 6

Gene

eif6

Organism
Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Initiation factor

Keywords - Biological processi

Protein biosynthesis

Enzyme and pathway databases

BioCyciMHUN323259:GH0L-3065-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Translation initiation factor 6UniRule annotation
Short name:
aIF-6UniRule annotation
Gene namesi
Name:eif6UniRule annotation
Ordered Locus Names:Mhun_3020
OrganismiMethanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1)
Taxonomic identifieri323259 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanomicrobialesMethanospirillaceaeMethanospirillum
ProteomesiUP000001941 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 221221Translation initiation factor 6PRO_0000259431Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi323259.Mhun_3020.

Structurei

3D structure databases

ProteinModelPortaliQ2FS97.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the eIF-6 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1976.
HOGENOMiHOG000230604.
KOiK03264.
OMAiNDWCAFT.

Family and domain databases

HAMAPiMF_00032. eIF_6.
InterProiIPR002769. eIF6.
[Graphical view]
PANTHERiPTHR10784. PTHR10784. 1 hit.
PfamiPF01912. eIF-6. 1 hit.
[Graphical view]
PIRSFiPIRSF006413. IF-6. 1 hit.
SMARTiSM00654. eIF6. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00323. eIF-6. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2FS97-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRFVSIAGD PHIGVFTRVF DDIAVVPPDV PEEVTTRYEE ALKVEIVRTT
60 70 80 90 100
IQRSPIIGSL LVGNNNGLVI TGMATEEEIA TLSEYRDLML LEEGMNAAGN
110 120 130 140 150
IILANDHFAA VHPEMDEEFM DALSDFLKVP VIPLTLGDVK TVGMAAVATN
160 170 180 190 200
SGVVVSPRTT PGEIQRLEQV CSLPVGKGTV TMGNAMVGTG LVANRYGYLA
210 220
GVGTSGYELG RIEDILGFEE E
Length:221
Mass (Da):23,654
Last modified:March 21, 2006 - v1
Checksum:i24D7E3CADEC1F112
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000254 Genomic DNA. Translation: ABD42707.1.
RefSeqiWP_011449958.1. NC_007796.1.
YP_504426.1. NC_007796.1.

Genome annotation databases

EnsemblBacteriaiABD42707; ABD42707; Mhun_3020.
GeneIDi3922842.
KEGGimhu:Mhun_3020.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000254 Genomic DNA. Translation: ABD42707.1.
RefSeqiWP_011449958.1. NC_007796.1.
YP_504426.1. NC_007796.1.

3D structure databases

ProteinModelPortaliQ2FS97.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi323259.Mhun_3020.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD42707; ABD42707; Mhun_3020.
GeneIDi3922842.
KEGGimhu:Mhun_3020.

Phylogenomic databases

eggNOGiCOG1976.
HOGENOMiHOG000230604.
KOiK03264.
OMAiNDWCAFT.

Enzyme and pathway databases

BioCyciMHUN323259:GH0L-3065-MONOMER.

Family and domain databases

HAMAPiMF_00032. eIF_6.
InterProiIPR002769. eIF6.
[Graphical view]
PANTHERiPTHR10784. PTHR10784. 1 hit.
PfamiPF01912. eIF-6. 1 hit.
[Graphical view]
PIRSFiPIRSF006413. IF-6. 1 hit.
SMARTiSM00654. eIF6. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00323. eIF-6. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27890 / DSM 864 / NBRC 100397 / JF-1.

Entry informationi

Entry nameiIF6_METHJ
AccessioniPrimary (citable) accession number: Q2FS97
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: March 21, 2006
Last modified: May 27, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Translation initiation factors
    List of translation initiation factor entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.