Q2F1F8 (Q2F1F8_9NOCA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: PcaR EMBL ABD14384.1
Organism	Rhodococcus sp. DK17 EMBL ABD14384.1
Taxonomic identifier	186196 [NCBI]
Taxonomic lineage	Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Rhodococcus

Protein attributes

Sequence length	265 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Contains 1 HTH iclR-type DNA-binding domain. RuleBase RU000705

Ontologies

Keywords
Biological process	Transcription Transcription regulation RuleBase RU000705
Ligand	DNA-binding RuleBase RU000705
Technical term	3D-structure PDB 2IA2
Gene Ontology (GO)
Biological process	positive regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro protocatechuate metabolic process Inferred from electronic annotation. Source: InterPro transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q2F1F8 [UniParc]. Last modified March 21, 2006. Version 1. Checksum: A6C27E13D7817BBF	FASTA	265	28,907
	10 20 30 40 50 60 MTATEPTEKI LPSPDYVQSL ARGLAVIRCF DHRNQRRTLS DVARATDLTR ATARRFLLTL 70 80 90 100 110 120 VELGYVATDG SAFWLTPRVL ELGYSYLSSL SLPEVAQPHL EKLSHKVHES SSVSILDGAD 130 140 150 160 170 180 IVYVARVPVS RIMTVGITIG TRLPAYATSM GRVLLAGLPD DELDAYLEKL DIQRLTERTI 190 200 210 220 230 240 TARDELKAAI LAVRADGICV LDQELEAGLR SMAAPIRNAS GLTVAAVNIS TPAARYSLED 250 260 LHSDLIPSLR VTATDIEQDL ATVNR

References

[1]	"Identification of protocatechuate-degrading gene clusters from Rhodococcus sp. strain DK17." Sohn S.Y., Chae J.C., Zylstra G.J., Kim E. Submitted (DEC-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[2]	"The crystal structure of a putative transcriptional regulator RHA06195 from Rhodococcus sp. RHA1." Cymborowski M.T., Chruszcz M., Skarina T., Onopriyenko O., Savchenko A., Edwards A., Minor W. Submitted (SEP-2006) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

DQ346669 Genomic DNA. Translation: ABD14384.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2IA2	X-ray	2.10	A/B/C/D	1-265	[»]

ProteinModelPortal

Q2F1F8.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Family and domain databases

InterPro

IPR012794. PcaR_PcaU.
IPR014757. Tscrpt_reg_IclR_C.
IPR005471. Tscrpt_reg_IclR_N.
IPR011991. WHTH_trsnscrt_rep_DNA-bd.
[Graphical view]

Gene3D

G3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.

Pfam

PF09339. HTH_IclR. 1 hit.
PF01614. IclR. 1 hit.
[Graphical view]

SMART

SM00346. HTH_ICLR. 1 hit.
[Graphical view]

TIGRFAMs

TIGR02431. PcaR_pcaU. 1 hit.

PROSITE

PS51077. HTH_ICLR. 1 hit.
PS51078. ICLR_ED. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Q2F1F8_9NOCA

Accession

Primary (citable) accession number: Q2F1F8

Entry history

Integrated into UniProtKB/TrEMBL:	March 21, 2006
Last sequence update:	March 21, 2006
Last modified:	June 28, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)