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Protein

UPF0370 protein YpfN

Gene

ypfN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciECOL316407:JW2457-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0370 protein YpfNUniRule annotation
Gene namesi
Name:ypfNUniRule annotation
Ordered Locus Names:b4547, JW2457
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14399. ypfN.

Subcellular locationi

  • Cell membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei4 – 2421HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6666UPF0370 protein YpfNPRO_0000244542Add
BLAST

Proteomic databases

PaxDbiQ2EET2.

Interactioni

Protein-protein interaction databases

BioGridi4259469. 6 interactions.
STRINGi511145.b4547.

Structurei

3D structure databases

ProteinModelPortaliQ2EET2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0370 family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105XYK. Bacteria.
ENOG41125PA. LUCA.
HOGENOMiHOG000290431.
OMAiDDWPQKK.
OrthoDBiEOG6PCQ4C.

Family and domain databases

HAMAPiMF_01566. UPF0370.
InterProiIPR020910. UPF0370.
[Graphical view]
PfamiPF13980. UPF0370. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2EET2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDWLAKYWWI LVIVFLVGVL LNVIKDLKRV DHKKFLANKP ELPPHRDFND
60
KWDDDDDWPK KDQPKK
Length:66
Mass (Da):8,071
Last modified:March 21, 2006 - v1
Checksum:i7C7618A2A9B58131
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18697.1.
AP009048 Genomic DNA. Translation: BAA16347.1.
X57403 Genomic DNA. Translation: CAA40666.1.
PIRiD42959.
RefSeqiWP_000383836.1. NZ_LN832404.1.
YP_588465.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABD18697; ABD18697; b4547.
BAA16347; BAA16347; BAA16347.
GeneIDi1450286.
KEGGiecj:JW2457.
eco:b4547.
PATRICi32120329. VBIEscCol129921_2567.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18697.1.
AP009048 Genomic DNA. Translation: BAA16347.1.
X57403 Genomic DNA. Translation: CAA40666.1.
PIRiD42959.
RefSeqiWP_000383836.1. NZ_LN832404.1.
YP_588465.1. NC_000913.3.

3D structure databases

ProteinModelPortaliQ2EET2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259469. 6 interactions.
STRINGi511145.b4547.

Proteomic databases

PaxDbiQ2EET2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD18697; ABD18697; b4547.
BAA16347; BAA16347; BAA16347.
GeneIDi1450286.
KEGGiecj:JW2457.
eco:b4547.
PATRICi32120329. VBIEscCol129921_2567.

Organism-specific databases

EcoGeneiEG14399. ypfN.

Phylogenomic databases

eggNOGiENOG4105XYK. Bacteria.
ENOG41125PA. LUCA.
HOGENOMiHOG000290431.
OMAiDDWPQKK.
OrthoDBiEOG6PCQ4C.

Enzyme and pathway databases

BioCyciECOL316407:JW2457-MONOMER.

Miscellaneous databases

PROiQ2EET2.

Family and domain databases

HAMAPiMF_01566. UPF0370.
InterProiIPR020910. UPF0370.
[Graphical view]
PfamiPF13980. UPF0370. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Cloning, characterization, and expression of the dapE gene of Escherichia coli."
    Bouvier J., Richaud C., Higgins W., Bogler O., Stragier S.
    J. Bacteriol. 174:5265-5271(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-31.
    Strain: K12.

Entry informationi

Entry nameiYPFN_ECOLI
AccessioniPrimary (citable) accession number: Q2EET2
Secondary accession number(s): P77259, Q79AR5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 21, 2006
Last modified: January 20, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.