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Protein

Putative uncharacterized protein YmjC

Gene

ymjC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

Enzyme and pathway databases

BioCyciECOL316407:JW5960-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YmjC
Gene namesi
Name:ymjC
Ordered Locus Names:b4525, JW5960
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14420. ymjC.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6060Putative uncharacterized protein YmjCPRO_0000252227Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4262875. 1 interaction.
STRINGi316407.85674906.

Structurei

3D structure databases

ProteinModelPortaliQ2EER5.
SMRiQ2EER5. Positions 1-46.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0702. LUCA.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2EER5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNVLILGAG GQIARHVINQ LADKQTIKQT LFARQPAKIH KPYPTNKMQT
60
TSGKKVIQDR
Length:60
Mass (Da):6,725
Last modified:March 21, 2006 - v1
Checksum:i28DC8CE53B5E133A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76402.1.
RefSeqiWP_000800171.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiBAE76402; BAE76402; BAE76402.
KEGGiecj:JW5960.
PATRICi48661951. VBIEscCol107702_1339.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76402.1.
RefSeqiWP_000800171.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ2EER5.
SMRiQ2EER5. Positions 1-46.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262875. 1 interaction.
STRINGi316407.85674906.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE76402; BAE76402; BAE76402.
KEGGiecj:JW5960.
PATRICi48661951. VBIEscCol107702_1339.

Organism-specific databases

EcoGeneiEG14420. ymjC.

Phylogenomic databases

eggNOGiCOG0702. LUCA.

Enzyme and pathway databases

BioCyciECOL316407:JW5960-MONOMER.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYMJC_ECOLI
AccessioniPrimary (citable) accession number: Q2EER5
Secondary accession number(s): Q2MBF4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 3, 2006
Last sequence update: March 21, 2006
Last modified: January 20, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.