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Protein

50S ribosomal protein L36 2

Gene

ykgO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein
Biological processStress response

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2656.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36 2
Alternative name(s):
Large ribosomal subunit protein bL36-B1 Publication
Gene namesi
Name:ykgO
Synonyms:rpmJ2
Ordered Locus Names:b4506, JW5034
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14432. ykgO.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002466801 – 4650S ribosomal protein L36 2Add BLAST46

Proteomic databases

PaxDbiQ2EEQ2.
PRIDEiQ2EEQ2.

Expressioni

Inductioni

Expressed during stationary phase in minimal glucose medium (PubMed:19121005), induced by EDTA, strongly repressed on shifting from minimal glucose to minimal glycerol medium (at protein level). Induced under zinc-limiting conditions in stationary phase; repressed by the zinc uptake regulatory protein Zur.2 Publications

Interactioni

Protein-protein interaction databases

STRINGi316385.ECDH10B_0284.

Structurei

3D structure databases

ProteinModelPortaliQ2EEQ2.
SMRiQ2EEQ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105YK5. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111585.
InParanoidiQ2EEQ2.
KOiK02919.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiView protein in InterPro
IPR000473. Ribosomal_L36.
PfamiView protein in Pfam
PF00444. Ribosomal_L36. 1 hit.
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00828. RIBOSOMAL_L36. 1 hit.

Sequencei

Sequence statusi: Complete.

Q2EEQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MKVLNSLRTA KERHPDCQIV KRKGRLYVIC KSNPRFKAVQ GRKKKR
Length:46
Mass (Da):5,467
Last modified:March 21, 2006 - v1
Checksum:i52A1414F9D444017
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18636.1.
AP009048 Genomic DNA. Translation: BAE76080.1.
RefSeqiWP_000866436.1. NZ_LN832404.1.
YP_588437.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABD18636; ABD18636; b4506.
BAE76080; BAE76080; BAE76080.
GeneIDi1450238.
KEGGiecj:JW5034.
eco:b4506.
PATRICifig|1411691.4.peg.1983.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL362_ECOLI
AccessioniPrimary (citable) accession number: Q2EEQ2
Secondary accession number(s): Q2MCC6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 25, 2006
Last sequence update: March 21, 2006
Last modified: July 5, 2017
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families