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Protein

50S ribosomal protein L36 2

Gene

ykgO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Biological processi

Stress response

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2656.
ECOL316407:JW5034-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L36 2
Gene namesi
Name:ykgO
Synonyms:rpmJ2
Ordered Locus Names:b4506, JW5034
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14432. ykgO.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002466801 – 4650S ribosomal protein L36 2Add BLAST46

Proteomic databases

PaxDbiQ2EEQ2.
PRIDEiQ2EEQ2.

Expressioni

Inductioni

Expressed during stationary phase in minimal glucose medium (PubMed:19121005), induced by EDTA, strongly repressed on shifting from minimal glucose to minimal glycerol medium (at protein level). Induced under zinc-limiting conditions in stationary phase; repressed by the zinc uptake regulatory protein Zur.2 Publications

Interactioni

Protein-protein interaction databases

STRINGi511145.b4506.

Structurei

3D structure databases

ProteinModelPortaliQ2EEQ2.
SMRiQ2EEQ2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L36P family.Curated

Phylogenomic databases

eggNOGiENOG4105YK5. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111585.
InParanoidiQ2EEQ2.
KOiK02919.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q2EEQ2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MKVLNSLRTA KERHPDCQIV KRKGRLYVIC KSNPRFKAVQ GRKKKR
Length:46
Mass (Da):5,467
Last modified:March 21, 2006 - v1
Checksum:i52A1414F9D444017
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18636.1.
AP009048 Genomic DNA. Translation: BAE76080.1.
RefSeqiWP_000866436.1. NZ_LN832404.1.
YP_588437.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiABD18636; ABD18636; b4506.
BAE76080; BAE76080; BAE76080.
GeneIDi1450238.
KEGGiecj:JW5034.
eco:b4506.
PATRICi32115715. VBIEscCol129921_0300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: ABD18636.1.
AP009048 Genomic DNA. Translation: BAE76080.1.
RefSeqiWP_000866436.1. NZ_LN832404.1.
YP_588437.1. NC_000913.3.

3D structure databases

ProteinModelPortaliQ2EEQ2.
SMRiQ2EEQ2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi511145.b4506.

Proteomic databases

PaxDbiQ2EEQ2.
PRIDEiQ2EEQ2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD18636; ABD18636; b4506.
BAE76080; BAE76080; BAE76080.
GeneIDi1450238.
KEGGiecj:JW5034.
eco:b4506.
PATRICi32115715. VBIEscCol129921_0300.

Organism-specific databases

EcoGeneiEG14432. ykgO.

Phylogenomic databases

eggNOGiENOG4105YK5. Bacteria.
COG0257. LUCA.
HOGENOMiHOG000111585.
InParanoidiQ2EEQ2.
KOiK02919.

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2656.
ECOL316407:JW5034-MONOMER.

Miscellaneous databases

PROiQ2EEQ2.

Family and domain databases

HAMAPiMF_00251. Ribosomal_L36. 1 hit.
InterProiIPR000473. Ribosomal_L36.
[Graphical view]
PANTHERiPTHR18804. PTHR18804. 1 hit.
PfamiPF00444. Ribosomal_L36. 1 hit.
[Graphical view]
SUPFAMiSSF57840. SSF57840. 1 hit.
TIGRFAMsiTIGR01022. rpmJ_bact. 1 hit.
PROSITEiPS00828. RIBOSOMAL_L36. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL362_ECOLI
AccessioniPrimary (citable) accession number: Q2EEQ2
Secondary accession number(s): Q2MCC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 25, 2006
Last sequence update: March 21, 2006
Last modified: November 2, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.