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Protein
Submitted name:

GA20603

Gene

Dpse\GA20603

Organism
Drosophila pseudoobscura pseudoobscura (Fruit fly)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
GA20603Imported (EC:4.1.1.-Imported)
Gene namesi
Name:Dpse\GA20603Imported
ORF Names:Dpse_GA20603Imported, GA20603Imported
OrganismiDrosophila pseudoobscura pseudoobscura (Fruit fly)Imported
Taxonomic identifieri46245 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000001819 Componenti: Partially assembled WGS sequence

Organism-specific databases

FlyBaseiFBgn0080597. Dpse\GA20603.

Interactioni

Protein-protein interaction databases

STRINGi7237.FBpp0287318.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

InParanoidiQ29K73.
KOiK01580.
OMAiXNLLKRC.
OrthoDBiEOG7H1JM3.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

Q29K73-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLASETFPAH RFKESIFKPY STSGSASVDD LASVNKTLTS AATTSSSPDT
60 70 80 90 100
HAAVDIAPTA SSVEFETARK MLTNNSSSSS NNSNNNNNNN NNDAKDDISG
110 120 130 140 150
FVASHPAAPF EGFIRACVDE IIKLAVFQGT NRSTKVVEWH EPAELRQLFD
160 170 180 190 200
FQLRDKGEPQ EKLRELLRET IRFSVKTGHP YFINQLYSGV DPYALVGQWL
210 220 230 240 250
TDALNPSVYT YEVAPLFTLM EEQVLAEMRR IVGFPNGGQG DGIFCPGGSI
260 270 280 290 300
ANGYAISCAR YTHAPESKKN GLFNAKPLII FTSEDAHYSV EKLAMFMGFG
310 320 330 340 350
SEHVVKIATN EVGKMRLSDL EDQVRRCLDN GWQPLMVSAT AGTTVLGAFD
360 370 380 390 400
DLTGIGDLCN KYNMWMHVDA AWGGGALMSK KYRHLLNDIE RADSVTWNPH
410 420 430 440 450
KLLAASQQCS TFLTRHQLVL GQCHSTNAAY LFQKDKFYDT SYDTGDKHIQ
460 470 480 490 500
CGRRADVFKF WFMWKAKGNL GLESHVEKVF RMAEFFTAKV RERPGFELVL
510 520 530 540 550
ESPECTNISF WYVPPSLRTM ERDREFYDKL HKVAPKVKER MIKKGSMMIT
560 570 580
YQPLRQLPNF FRLVLQNSCL EESDMIYFLD EIESLAKNL
Length:589
Mass (Da):66,313
Last modified:October 14, 2008 - v2
Checksum:iCE9E1BE89D36EA88
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH379061 Genomic DNA. Translation: EAL33304.2.
RefSeqiXP_001356242.2. XM_001356206.2.

Genome annotation databases

EnsemblMetazoaiFBtr0288880; FBpp0287318; FBgn0080597.
GeneIDi4816279.
KEGGidpo:Dpse_GA20603.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH379061 Genomic DNA. Translation: EAL33304.2.
RefSeqiXP_001356242.2. XM_001356206.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7237.FBpp0287318.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0288880; FBpp0287318; FBgn0080597.
GeneIDi4816279.
KEGGidpo:Dpse_GA20603.

Organism-specific databases

FlyBaseiFBgn0080597. Dpse\GA20603.

Phylogenomic databases

InParanoidiQ29K73.
KOiK01580.
OMAiXNLLKRC.
OrthoDBiEOG7H1JM3.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution."
    Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S., Nielsen R., Thornton K., Hubisz M.J., Chen R., Meisel R.P., Couronne O., Hua S., Smith M.A., Zhang P., Liu J., Bussemaker H.J., van Batenburg M.F., Howells S.L.
    , Scherer S.E., Sodergren E., Matthews B.B., Crosby M.A., Schroeder A.J., Ortiz-Barrientos D., Rives C.M., Metzker M.L., Muzny D.M., Scott G., Steffen D., Wheeler D.A., Worley K.C., Havlak P., Durbin K.J., Egan A., Gill R., Hume J., Morgan M.B., Miner G., Hamilton C., Huang Y., Waldron L., Verduzco D., Clerc-Blankenburg K.P., Dubchak I., Noor M.A.F., Anderson W., White K.P., Clark A.G., Schaeffer S.W., Gelbart W.M., Weinstock G.M., Gibbs R.A.
    Genome Res. 15:1-18(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MV2-25 / Tucson 14011-0121.94Imported.
  2. "Evolution of genes and genomes on the Drosophila phylogeny."
    Drosophila 12 genomes consortium
    Nature 450:203-218(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MV2-25Imported.

Entry informationi

Entry nameiQ29K73_DROPS
AccessioniPrimary (citable) accession number: Q29K73
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: October 14, 2008
Last modified: January 7, 2015
This is version 49 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.