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Q29FM5

- Q29FM5_DROPS

UniProt

Q29FM5 - Q29FM5_DROPS

Protein
Submitted name:

GA11455

Gene

Dpse\GA11455

Organism
Drosophila pseudoobscura pseudoobscura (Fruit fly)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 2 (14 Oct 2008)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro
    3. DNA replication Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    GA11455Imported (EC:6.5.1.1Imported)
    Gene namesi
    Name:Dpse\GA11455Imported
    ORF Names:Dpse_GA11455Imported, GA11455Imported
    OrganismiDrosophila pseudoobscura pseudoobscura (Fruit fly)Imported
    Taxonomic identifieri46245 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
    ProteomesiUP000001819: Partially assembled WGS sequence

    Organism-specific databases

    FlyBaseiFBgn0071506. Dpse\GA11455.

    Interactioni

    Protein-protein interaction databases

    STRINGi7237.FBpp0285479.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    InParanoidiQ29FM5.
    KOiK10777.
    OrthoDBiEOG7BKCT2.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 2 hits.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50172. BRCT. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q29FM5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDIATTVKFR DVCELFEKVK AAKKVQDKED VLRSYYESFC RHREAFRQAA    50
    GLTDEQSENG SSSFHSVLRL LLPSADTRRD NYGLQITALG RLYTRVLQLT 100
    RDSRDAIMLQ HRTGSSFRDY GDVVYAVLVS RCFNPPSDLR LNAIHEMLDT 150
    IANEDTSVKE QELIRFTEQA SAREQKWLIR ILLKSLGLGI GEQRIFGVLH 200
    PNAKDIYQRC SDLSHVCNLV ADKVSDLKVS DTKITGNSHP STVNLNAVIR 250
    PFHQIRPMLC ERFPGDIQEL MQSDVLYLET KMDGERFQLH IDRGRFMYLS 300
    RNGVDYSNNF GESYSRGTLT PQLRGLLPLG LQTIILDGEM MVWDTNQKRY 350
    REKGENTDVK NLKPDRSWRP CFVVYDLLYF NGQSLLDLTY IQRSYKLQKL 400
    IGEQQGVLQL MRGTKIGSIE EFNKLFQQAL DSNAEGIVLK KQSSIYQPGV 450
    RVGGGWYKDK ADYIKGLITE FDVLIIGGFY NRKRTFIDSF LLGVLQPMAN 500
    SDSRHEVYSI GCVTNNTRQA VVLNHTLRPH WHDTTKEPPP LWYHYMANEK 550
    IGSPDLWIDP HNSIILQVKA ADLTPNSAFY TPKALHFPRI ELKRDDKAWN 600
    ECMTLQEFNQ LCEGSGPIKK LNKRHLCLDD LTTKRKRLRM TPAERRRLGL 650
    AIYEKRYDVG TSSSCTKLFE GLSFCILSGA PGQSKHKLQE LAAKNGGCIV 700
    ENPLPNDPKC FCIAGDQTFL VKRLMQQQPC TSDIVRMEWL IRVCQEQELE 750
    LRPKDLLSAT EPLQDDLAEW FDKLGDSYTK DFASVDELLE LLQDIGKEEL 800
    AVNHVSQSEI NAFEDKLLGQ ATRNIFRDLH AYFYDPKGDE LSKVLFLQNG 850
    GTLASESDPQ LNLVFVCLSS DIDDNYFESW LHNHLSSYSG EVLNSAWIHQ 900
    SHRERRLLKM SCFSFK 916
    Length:916
    Mass (Da):105,009
    Last modified:October 14, 2008 - v2
    Checksum:iF223C47918AF8DC4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CH379066 Genomic DNA. Translation: EAL31375.2.
    RefSeqiXP_001354322.2. XM_001354286.2.

    Genome annotation databases

    EnsemblMetazoaiFBtr0287041; FBpp0285479; FBgn0071506.
    GeneIDi4814214.
    KEGGidpo:Dpse_GA11455.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CH379066 Genomic DNA. Translation: EAL31375.2 .
    RefSeqi XP_001354322.2. XM_001354286.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7237.FBpp0285479.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai FBtr0287041 ; FBpp0285479 ; FBgn0071506 .
    GeneIDi 4814214.
    KEGGi dpo:Dpse_GA11455.

    Organism-specific databases

    FlyBasei FBgn0071506. Dpse\GA11455.

    Phylogenomic databases

    InParanoidi Q29FM5.
    KOi K10777.
    OrthoDBi EOG7BKCT2.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 2 hits.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50172. BRCT. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution."
      Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S., Nielsen R., Thornton K., Hubisz M.J., Chen R., Meisel R.P., Couronne O., Hua S., Smith M.A., Zhang P., Liu J., Bussemaker H.J., van Batenburg M.F., Howells S.L.
      , Scherer S.E., Sodergren E., Matthews B.B., Crosby M.A., Schroeder A.J., Ortiz-Barrientos D., Rives C.M., Metzker M.L., Muzny D.M., Scott G., Steffen D., Wheeler D.A., Worley K.C., Havlak P., Durbin K.J., Egan A., Gill R., Hume J., Morgan M.B., Miner G., Hamilton C., Huang Y., Waldron L., Verduzco D., Clerc-Blankenburg K.P., Dubchak I., Noor M.A.F., Anderson W., White K.P., Clark A.G., Schaeffer S.W., Gelbart W.M., Weinstock G.M., Gibbs R.A.
      Genome Res. 15:1-18(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MV2-25 / Tucson 14011-0121.94Imported.
    2. "Evolution of genes and genomes on the Drosophila phylogeny."
      Drosophila 12 genomes consortium
      Nature 450:203-218(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: MV2-25Imported.

    Entry informationi

    Entry nameiQ29FM5_DROPS
    AccessioniPrimary (citable) accession number: Q29FM5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 4, 2006
    Last sequence update: October 14, 2008
    Last modified: October 1, 2014
    This is version 56 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3