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Q29FM5

- Q29FM5_DROPS

UniProt

Q29FM5 - Q29FM5_DROPS

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Protein
Submitted name: GA11455
Gene
Dpse\GA11455, Dpse_GA11455, GA11455
Organism
Drosophila pseudoobscura pseudoobscura (Fruit fly)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
  3. DNA replication Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
GA11455Imported (EC:6.5.1.1Imported)
Gene namesi
Name:Dpse\GA11455Imported
ORF Names:Dpse_GA11455Imported, GA11455Imported
OrganismiDrosophila pseudoobscura pseudoobscura (Fruit fly)Imported
Taxonomic identifieri46245 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
ProteomesiUP000001819: Partially assembled WGS sequence

Organism-specific databases

FlyBaseiFBgn0071506. Dpse\GA11455.

Interactioni

Protein-protein interaction databases

STRINGi7237.FBpp0285479.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiQ29FM5.
KOiK10777.
OrthoDBiEOG7BKCT2.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q29FM5-1 [UniParc]FASTAAdd to Basket

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MDIATTVKFR DVCELFEKVK AAKKVQDKED VLRSYYESFC RHREAFRQAA    50
GLTDEQSENG SSSFHSVLRL LLPSADTRRD NYGLQITALG RLYTRVLQLT 100
RDSRDAIMLQ HRTGSSFRDY GDVVYAVLVS RCFNPPSDLR LNAIHEMLDT 150
IANEDTSVKE QELIRFTEQA SAREQKWLIR ILLKSLGLGI GEQRIFGVLH 200
PNAKDIYQRC SDLSHVCNLV ADKVSDLKVS DTKITGNSHP STVNLNAVIR 250
PFHQIRPMLC ERFPGDIQEL MQSDVLYLET KMDGERFQLH IDRGRFMYLS 300
RNGVDYSNNF GESYSRGTLT PQLRGLLPLG LQTIILDGEM MVWDTNQKRY 350
REKGENTDVK NLKPDRSWRP CFVVYDLLYF NGQSLLDLTY IQRSYKLQKL 400
IGEQQGVLQL MRGTKIGSIE EFNKLFQQAL DSNAEGIVLK KQSSIYQPGV 450
RVGGGWYKDK ADYIKGLITE FDVLIIGGFY NRKRTFIDSF LLGVLQPMAN 500
SDSRHEVYSI GCVTNNTRQA VVLNHTLRPH WHDTTKEPPP LWYHYMANEK 550
IGSPDLWIDP HNSIILQVKA ADLTPNSAFY TPKALHFPRI ELKRDDKAWN 600
ECMTLQEFNQ LCEGSGPIKK LNKRHLCLDD LTTKRKRLRM TPAERRRLGL 650
AIYEKRYDVG TSSSCTKLFE GLSFCILSGA PGQSKHKLQE LAAKNGGCIV 700
ENPLPNDPKC FCIAGDQTFL VKRLMQQQPC TSDIVRMEWL IRVCQEQELE 750
LRPKDLLSAT EPLQDDLAEW FDKLGDSYTK DFASVDELLE LLQDIGKEEL 800
AVNHVSQSEI NAFEDKLLGQ ATRNIFRDLH AYFYDPKGDE LSKVLFLQNG 850
GTLASESDPQ LNLVFVCLSS DIDDNYFESW LHNHLSSYSG EVLNSAWIHQ 900
SHRERRLLKM SCFSFK 916
Length:916
Mass (Da):105,009
Last modified:October 14, 2008 - v2
Checksum:iF223C47918AF8DC4
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CH379066 Genomic DNA. Translation: EAL31375.2.
RefSeqiXP_001354322.2. XM_001354286.2.

Genome annotation databases

EnsemblMetazoaiFBtr0287041; FBpp0285479; FBgn0071506.
GeneIDi4814214.
KEGGidpo:Dpse_GA11455.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CH379066 Genomic DNA. Translation: EAL31375.2 .
RefSeqi XP_001354322.2. XM_001354286.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 7237.FBpp0285479.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai FBtr0287041 ; FBpp0285479 ; FBgn0071506 .
GeneIDi 4814214.
KEGGi dpo:Dpse_GA11455.

Organism-specific databases

FlyBasei FBgn0071506. Dpse\GA11455.

Phylogenomic databases

InParanoidi Q29FM5.
KOi K10777.
OrthoDBi EOG7BKCT2.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution."
    Richards S., Liu Y., Bettencourt B.R., Hradecky P., Letovsky S., Nielsen R., Thornton K., Hubisz M.J., Chen R., Meisel R.P., Couronne O., Hua S., Smith M.A., Zhang P., Liu J., Bussemaker H.J., van Batenburg M.F., Howells S.L.
    , Scherer S.E., Sodergren E., Matthews B.B., Crosby M.A., Schroeder A.J., Ortiz-Barrientos D., Rives C.M., Metzker M.L., Muzny D.M., Scott G., Steffen D., Wheeler D.A., Worley K.C., Havlak P., Durbin K.J., Egan A., Gill R., Hume J., Morgan M.B., Miner G., Hamilton C., Huang Y., Waldron L., Verduzco D., Clerc-Blankenburg K.P., Dubchak I., Noor M.A.F., Anderson W., White K.P., Clark A.G., Schaeffer S.W., Gelbart W.M., Weinstock G.M., Gibbs R.A.
    Genome Res. 15:1-18(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MV2-25 / Tucson 14011-0121.94.
  2. "Evolution of genes and genomes on the Drosophila phylogeny."
    Drosophila 12 genomes consortium
    Nature 450:203-218(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MV2-25Imported.

Entry informationi

Entry nameiQ29FM5_DROPS
AccessioniPrimary (citable) accession number: Q29FM5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: October 14, 2008
Last modified: September 3, 2014
This is version 55 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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