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Protein

40S ribosomal protein S16

Gene

RPS16

Organism
Sus scrofa (Pig)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-SSC-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SSC-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SSC-72702. Ribosomal scanning and start codon recognition.
R-SSC-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SSC-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S16
Gene namesi
Name:RPS16
OrganismiSus scrofa (Pig)
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus
Proteomesi
  • UP000008227 Componenti: Chromosome 6

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methionineiRemovedBy similarity
Chaini2 – 14614540S ribosomal protein S16PRO_0000111481Add
BLAST

Proteomic databases

PaxDbiQ29201.
PRIDEiQ29201.

Expressioni

Gene expression databases

GenevisibleiQ29201. SS.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000027401.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J7Pelectron microscopy3.50SQ1-146[»]
3J7Relectron microscopy3.90SQ1-146[»]
ProteinModelPortaliQ29201.
SMRiQ29201. Positions 8-146.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S9P family.Curated

Phylogenomic databases

eggNOGiKOG1753. Eukaryota.
COG0103. LUCA.
GeneTreeiENSGT00390000013067.
HOGENOMiHOG000019803.
HOVERGENiHBG055171.
InParanoidiQ29201.
KOiK02960.
OMAiYYQKFVD.
OrthoDBiEOG754HQW.
TreeFamiTF300088.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
InterProiIPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR020574. Ribosomal_S9_CS.
[Graphical view]
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiPF00380. Ribosomal_S9. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiPS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q29201-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSKGPLQSV QVFGRKKTAT AVAHCKRGNG LIKVNGRPLE MIEPRTLQYK
60 70 80 90 100
LLEPVLLLGK ERFAGVDIRV RVKGGGHVAQ IYAIRQSISK ALVAYYQKYV
110 120 130 140
DEASKKEIKD ILIQYDRTLL VADPRRCESK KFGGPGARAR YQKSYR
Length:146
Mass (Da):16,445
Last modified:January 23, 2007 - v4
Checksum:i519BCFB91BB68A15
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
F14526 mRNA. Translation: CAA23106.1.
AY550068 mRNA. Translation: AAS55926.1.
RefSeqiNP_001131092.1. NM_001137620.1.
XP_003355952.1. XM_003355904.3.
UniGeneiSsc.16651.

Genome annotation databases

EnsembliENSSSCT00000024602; ENSSSCP00000027401; ENSSSCG00000020817.
GeneIDi100623279.
414397.
KEGGissc:100623279.
ssc:414397.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
F14526 mRNA. Translation: CAA23106.1.
AY550068 mRNA. Translation: AAS55926.1.
RefSeqiNP_001131092.1. NM_001137620.1.
XP_003355952.1. XM_003355904.3.
UniGeneiSsc.16651.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3J7Pelectron microscopy3.50SQ1-146[»]
3J7Relectron microscopy3.90SQ1-146[»]
ProteinModelPortaliQ29201.
SMRiQ29201. Positions 8-146.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000027401.

Proteomic databases

PaxDbiQ29201.
PRIDEiQ29201.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSSSCT00000024602; ENSSSCP00000027401; ENSSSCG00000020817.
GeneIDi100623279.
414397.
KEGGissc:100623279.
ssc:414397.

Organism-specific databases

CTDi6217.

Phylogenomic databases

eggNOGiKOG1753. Eukaryota.
COG0103. LUCA.
GeneTreeiENSGT00390000013067.
HOGENOMiHOG000019803.
HOVERGENiHBG055171.
InParanoidiQ29201.
KOiK02960.
OMAiYYQKFVD.
OrthoDBiEOG754HQW.
TreeFamiTF300088.

Enzyme and pathway databases

ReactomeiR-SSC-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SSC-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SSC-72702. Ribosomal scanning and start codon recognition.
R-SSC-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SSC-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Gene expression databases

GenevisibleiQ29201. SS.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
InterProiIPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR020574. Ribosomal_S9_CS.
[Graphical view]
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiPF00380. Ribosomal_S9. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiPS00360. RIBOSOMAL_S9. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Evaluation and characterization of a porcine small intestine cDNA library: analysis of 839 clones."
    Winteroe A.K., Fredholm M., Davies W.
    Mamm. Genome 7:509-517(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-136.
    Tissue: Small intestine.
  2. "Identification of differentially expressed genes in porcine embryos."
    Lee H.Y., Cui X.S., Jeong Y.J., Shin M.L., Hwang K.C., Kim N.H.
    Submitted (FEB-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 80-146.

Entry informationi

Entry nameiRS16_PIG
AccessioniPrimary (citable) accession number: Q29201
Secondary accession number(s): Q6QAQ2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: January 23, 2007
Last modified: June 8, 2016
This is version 97 of the entry and version 4 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.