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Protein
Submitted name:

Scavenger-receptor protein

Gene

WC1

Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

ReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Scavenger-receptor proteinImported
Gene namesi
Name:WC1Imported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei614 – 637HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24Sequence analysisAdd BLAST24
ChainiPRO_500420529025 – 804Sequence analysisAdd BLAST780

Keywords - PTMi

Disulfide bondSAAS annotation

Proteomic databases

PRIDEiQ29113.

Structurei

3D structure databases

ProteinModelPortaliQ29113.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini27 – 129SRCRInterPro annotationAdd BLAST103
Domaini132 – 232SRCRInterPro annotationAdd BLAST101
Domaini237 – 335SRCRInterPro annotationAdd BLAST99
Domaini371 – 471SRCRInterPro annotationAdd BLAST101
Domaini490 – 590SRCRInterPro annotationAdd BLAST101

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOVERGENiHBG080943.

Family and domain databases

Gene3Di3.10.250.10. 5 hits.
InterProiIPR001190. SRCR.
IPR017448. SRCR-like_dom.
[Graphical view]
PfamiPF00530. SRCR. 5 hits.
[Graphical view]
PRINTSiPR00258. SPERACTRCPTR.
SMARTiSM00202. SR. 5 hits.
[Graphical view]
SUPFAMiSSF56487. SSF56487. 5 hits.
PROSITEiPS00420. SRCR_1. 1 hit.
PS50287. SRCR_2. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q29113-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALDRHLSLQ GLCFLLLIVV GGQALELRLK DGRHRCEGRV ELKHQGKWGT
60 70 80 90 100
VNRAYWGLPR ATVVCRQLEC GTAVDAPVAS YFGRGDGPIW LYAFCEGTES
110 120 130 140 150
TLTDCRHPNI TDYRTKGFSH DWDAGAVCSG FVRLVVGDRP CSGRVEVHSG
160 170 180 190 200
EDWTPVSDGN FTFPTAHVIC AELGCGKAVS VLGQRPLREP GNQVWPEEFR
210 220 230 240 250
CKGDEPELWS CPRVPCPGGT CHHSGAVQVV CSAYSEVRLM RNGTSQCAGR
260 270 280 290 300
VEMNISGGWR TLCASHWTMA NANVVCHQLG CGVALSTPKG AEGGDQMWKA
310 320 330 340 350
RFHCSGAESF LWNCPVTALG VPDCAHGNTA SVICSGNQTQ VLPQCNDSLS
360 370 380 390 400
EPAGSAASEE STTNCSESLA LRMVSEDQEC AGWLEVFYNG TWGGVCRSPM
410 420 430 440 450
EDITLSMICR QLGCGDSGTL NSSVSLREGS RPRWVDGIQC GKTDTSFWQC
460 470 480 490 500
PSDPWKNSSC SLTEEAYVSC AGRRPKSCPT AAPCTDKEKL RLRGGDSVCS
510 520 530 540 550
GRVEVWHSGS WGTVCDDSWS LAEAEVVCQQ LGCGHALEAL RDAAFGPGNG
560 570 580 590 600
SIWLDEVQCR GRESSLWDCA AGPWGQSDCK HEEDAGVRCS GQRTTSPPTI
610 620 630 640 650
AGARPGSNPI PGIFSLPEIL CLILGALLFL VLTIQVTQLF RWRAERRALS
660 670 680 690 700
GLEGALAEAV YEEIDYLVTP KEDLLGSPGF LSDDSVTKLP YYTGEGEENR
710 720 730 740 750
DSKSAPDEPP TQGIDAPSEG YDDAEEVPVP GAPAASLMSK REVPPEEESG
760 770 780 790 800
MRVSQTGSSL NFPRGEAEPE KGEAIRWLHQ GEIFDPGYDD VEISAPGTFT

VAFP
Length:804
Mass (Da):86,628
Last modified:November 1, 1996 - v1
Checksum:iA5A981A269EA0738
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X99336 Genomic DNA. Translation: CAA67710.1.
RefSeqiNP_001116565.1. NM_001123093.1.
UniGeneiSsc.70938.

Genome annotation databases

GeneIDi100144477.
KEGGissc:100144477.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X99336 Genomic DNA. Translation: CAA67710.1.
RefSeqiNP_001116565.1. NM_001123093.1.
UniGeneiSsc.70938.

3D structure databases

ProteinModelPortaliQ29113.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ29113.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100144477.
KEGGissc:100144477.

Organism-specific databases

CTDi283316.

Phylogenomic databases

HOVERGENiHBG080943.

Family and domain databases

Gene3Di3.10.250.10. 5 hits.
InterProiIPR001190. SRCR.
IPR017448. SRCR-like_dom.
[Graphical view]
PfamiPF00530. SRCR. 5 hits.
[Graphical view]
PRINTSiPR00258. SPERACTRCPTR.
SMARTiSM00202. SR. 5 hits.
[Graphical view]
SUPFAMiSSF56487. SSF56487. 5 hits.
PROSITEiPS00420. SRCR_1. 1 hit.
PS50287. SRCR_2. 5 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ29113_PIG
AccessioniPrimary (citable) accession number: Q29113
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: October 5, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.