Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein - Jannaschia sp. (strain CCS1)

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Q28VU1 (Q28VU1_JANSC) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 49. History...

Clusters with 100%, 90%, 50% identity |

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein EMBL ABD53171.1

Gene names

Ordered Locus Names:

Jann_0254 EMBL ABD53171.1

Organism

Jannaschia sp. (strain CCS1) [Complete proteome] [HAMAP] EMBL ABD53171.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Jannaschia

Protein attributes

Sequence length	174 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	FMN PDB 2OU5 Flavoprotein PDB 2OU5 Nucleotide-binding PDB 2OU5
Technical term	3D-structure PDB 2OU5 Complete proteome
Gene Ontology (GO)
Molecular_function	FMN binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Regions

Nucleotide binding

4

Nucleotide binding

2

Nucleotide binding

2

Nucleotide binding

3

Sites

Binding site

1

Binding site

1

Sequences

Sequence

Length

Mass (Da)

Tools

Q28VU1 [UniParc].

Last modified April 4, 2006. Version 1.
Checksum: 7404BD5F54DA8F24
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174

19,180

        10         20         30         40         50         60 
MSDTVLTGLL DTVWQQFGRG TKDRHHPARH PTLATIGTDG PDLRTLVLRA ASHAEATLEF 

        70         80         90        100        110        120 
HTDAASPKVA HIRRDARVAI HIWIPKASLQ VRAKAIAKIL PGDPNLFAQL PEAARMNYQG 

       130        140        150        160        170 
PVPGTPLPAE PDATPNRFTR LICHLSEIDV LHLTTPHQRA VYTAPDWRGI WVSP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete sequence of chromosome of Jannaschia sp. CCS1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Chertkov O., Saunders E., Schmutz J., Larimer F. Richardson P. Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCS1.
[2]	"Crystal structure of pyridoxamine 5'-phosphate oxidase-related FMN-binding (YP_508196.1) from Jannaschia sp. CCS1 at 1.60 A resolution." Joint Center for Structural Genomics (JCSG) Submitted (FEB-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH FMN.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000264 Genomic DNA. Translation: ABD53171.1.

RefSeq

YP_508196.1. NC_007802.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2OU5	X-ray	1.60	A/B	1-174	[»]

ProteinModelPortal

SMR

Q28VU1. Positions 1-174.

ModBase

Protein-protein interaction databases

STRING

290400.Jann_0254.

Protocols and materials databases

DNASU

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABD53171; ABD53171; Jann_0254.

GeneID

KEGG

PATRIC

22144098. VBIJanSp43325_0326.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

OMA

Enzyme and pathway databases

BioCyc

JSP290400:GI1R-307-MONOMER.

Family and domain databases

Gene3D

2.30.110.10. 1 hit.

InterPro

IPR024624. Pyridox_Oxase_Alr4036_FMN-bd.
IPR012349. Split_barrel_FMN-bd.
[Graphical view]

Pfam

PF12766. Pyridox_oxase_2. 1 hit.
[Graphical view]

SUPFAM

SSF50475. FMN_binding. 1 hit.

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

Q28VU1_JANSC

Accession

Primary (citable) accession number: Q28VU1

Entry history

Integrated into UniProtKB/TrEMBL:	April 4, 2006
Last sequence update:	April 4, 2006
Last modified:	May 1, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info