Q28R20 (Q28R20_JANSC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV subunit B EMBL ABD54842.1
EC=5.99.1.3 EMBL ABD54842.1

Gene names

Ordered Locus Names:

Jann_1925

Organism

Jannaschia sp. (strain CCS1) [Complete proteome] [HAMAP]

Taxonomic identifier

290400 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Jannaschia

Protein attributes

Sequence length	653 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q28R20 [UniParc]. Last modified April 4, 2006. Version 1. Checksum: A1CFED6A48C690C5	FASTA	653	71,504
	10 20 30 40 50 60 MADDLLSGAP DDQSYDASSI EVLEGLEPVR KRPGMYIGGT DERALHHLVA EVLDNSMDEA 70 80 90 100 110 120 VAGYATRIEV ELHADHAVTI RDNGRGMPFD PHPKFPGKSA LEVILCTLHA GGKFSGKAYQ 130 140 150 160 170 180 TSGGLHGVGA SVVNALSDSM VVQVARDRKV VEQRFSRGLP LGPVTEIGAA PNRRGTTTTF 190 200 210 220 230 240 HADEQIFGSH RFKPARLMKM VQSKAYLFSG VEIRWKSAID DGETPTEATF HFPGGLSDYL 250 260 270 280 290 300 TETLGKTATY TEIPFAGKVE FQQRFNVPGS VEWAISWTPA RDGFIQSFCN TVPTPEGGTH 310 320 330 340 350 360 EAGFWAAILK GIRAYGELAG NKKAANITRD DIATGAGALV SCFIAEPEFV GQTKDRLATT 370 380 390 400 410 420 EAQRLVEQAV RDHFDNWLGQ NTKEAGAILD FLVLRAEERL RRRAEKETAR KSATKKLRLP 430 440 450 460 470 480 GKLVDCSQSA RDGTELFIVE GDSAGGSAKM ARNRKNQALL PLRGKILNVL GAASGKLTSN 490 500 510 520 530 540 AEISDLCQAL GVGMGTKFNI EDLRYDKIII MTDADVDGAH IAALLMTFFF SQMRPMIDGG 550 560 570 580 590 600 HLYLACPPLF RLTQGARRVY CLDEQERDEM MEKGLGGKGK IDVSRFKGLG EMDAKDLKET 610 620 630 640 650 TMDPESRKLI RVSVDDDVPG ETGDLVERLM GKKPELRFQY IQENARFVEE LDV

References

[1]

"Complete sequence of chromosome of Jannaschia sp. CCS1." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Chertkov O., Saunders E., Schmutz J., Larimer F. , Land M., Kyrpides N., Lykidis A., Moran M.A., Belas R., Ye W., Buchan A., Gonzalez J.M., Schell M.A., Richardson P. Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCS1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000264 Genomic DNA. Translation: ABD54842.1.
RefSeq	YP_509867.1. NC_007802.1.
3D structure databases
ProteinModelPortal	Q28R20.
ModBase	Search...
Protein-protein interaction databases
STRING	Q28R20.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3934376.
GenomeReviews	Gene locus Jann_1925 in contig CP000264_GR.
KEGG	jan:Jann_1925.
PATRIC	22147594. VBIJanSp43325_2064.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	FKPARLM.
PhylomeDB	Q28R20.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q28R20_JANSC

Accession

Primary (citable) accession number: Q28R20

Entry history

Integrated into UniProtKB/TrEMBL:	April 4, 2006
Last sequence update:	April 4, 2006
Last modified:	January 25, 2012
This is version 43 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)