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Protein

Xylose isomerase

Gene

Jann_2108

Organism
Jannaschia sp. (strain CCS1)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. xylose isomerase activity Source: UniProtKB-EC

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-KW
  2. pentose-phosphate shunt Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

Keywords - Ligandi

Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciJSP290400:GI1R-2125-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotationSAAS annotation (EC:5.3.1.5UniRule annotationSAAS annotation)
Gene namesi
Ordered Locus Names:Jann_2108Imported
OrganismiJannaschia sp. (strain CCS1)Imported
Taxonomic identifieri290400 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeJannaschia
ProteomesiUP000008326 Componenti: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Protein-protein interaction databases

STRINGi290400.Jann_2108.

Structurei

3D structure databases

ProteinModelPortaliQ28QI7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG4952.
HOGENOMiHOG000224339.
KOiK01805.
OrthoDBiEOG651SS4.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q28QI7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRPNRPRYA ARLNAFKQLT PGSDVRDWIA AAGQVGGLGA ADLNFPDHFA
60 70 80 90 100
VYDADQMGNF LGEAALTLNG IAMRYYTDPG FKLGAFTHPD AAVRQAALDV
110 120 130 140 150
TKQGIDTCAR MGGKTVTLWM GQDGFDYAFQ MDYGLAWDRT VAAIADICAH
160 170 180 190 200
DPNIDIAIEY KPNEPRAFAL MPDIGTTLLA CREVGAVNLG VTLDFAHVLY
210 220 230 240 250
ADEMPAHSAA LIGRHSRMIG LHLNDGYGKR DDGLMVGSVH AIQTVELLVA
260 270 280 290 300
MLRMGQTDVI YFDTFPDMGG LNPIEEARTN VAVTDRLMAV AESLMEDPAL
310 320
AQAIDRQDAA ASHRIVARAL YGS
Length:323
Mass (Da):34,938
Last modified:April 4, 2006 - v1
Checksum:i87F69DFE24C2BEF6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000264 Genomic DNA. Translation: ABD55025.1.
RefSeqiWP_011455229.1. NC_007802.1.
YP_510050.1. NC_007802.1.

Genome annotation databases

EnsemblBacteriaiABD55025; ABD55025; Jann_2108.
GeneIDi3934561.
KEGGijan:Jann_2108.
PATRICi22147966. VBIJanSp43325_2248.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000264 Genomic DNA. Translation: ABD55025.1.
RefSeqiWP_011455229.1. NC_007802.1.
YP_510050.1. NC_007802.1.

3D structure databases

ProteinModelPortaliQ28QI7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi290400.Jann_2108.

Protocols and materials databases

DNASUi3934561.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD55025; ABD55025; Jann_2108.
GeneIDi3934561.
KEGGijan:Jann_2108.
PATRICi22147966. VBIJanSp43325_2248.

Phylogenomic databases

eggNOGiCOG4952.
HOGENOMiHOG000224339.
KOiK01805.
OrthoDBiEOG651SS4.

Enzyme and pathway databases

BioCyciJSP290400:GI1R-2125-MONOMER.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
SUPFAMiSSF51658. SSF51658. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCS1Imported.

Entry informationi

Entry nameiQ28QI7_JANSC
AccessioniPrimary (citable) accession number: Q28QI7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: February 4, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.