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Protein
Submitted name:

Uncharacterized protein

Gene

Jann_2411

Organism
Jannaschia sp. (strain CCS1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi147 – 1471ZincCombined sources
Metal bindingi152 – 1521ZincCombined sources
Metal bindingi168 – 1681ZincCombined sources
Metal bindingi172 – 1721ZincCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciJSP290400:GI1R-2432-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:Jann_2411Imported
OrganismiJannaschia sp. (strain CCS1)Imported
Taxonomic identifieri290400 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeJannaschia
Proteomesi
  • UP000008326 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi290400.Jann_2411.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3H0NX-ray1.45A1-187[»]
ProteinModelPortaliQ28PN4.
SMRiQ28PN4. Positions 1-184.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ28PN4.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini143 – 18543zf-CGNRInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105RUK. Bacteria.
ENOG4112090. LUCA.
HOGENOMiHOG000220053.
OMAiHDGEPWH.
OrthoDBiEOG6XM7HB.

Family and domain databases

Gene3Di1.10.3300.10. 1 hit.
InterProiIPR010852. ABATE.
IPR023286. ABATE_dom.
IPR021005. Znf_CGNR.
[Graphical view]
PfamiPF07336. ABATE. 1 hit.
PF11706. zf-CGNR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q28PN4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLDSYERTG LRVSLDLVNI ATPGSRRGTP HTGGCVIEDL HDLLKDDPAS
60 70 80 90 100
VAQLGDDHVE GFVELARLLH TAIDALSNGQ VATAATALNH LLRKHPATPE
110 120 130 140 150
LAQDPDGTWR LHHHPLDAEL VPMWTAICAE GLAREIGHQN VRRFGICNAH
160 170 180
RCDRVYFDTS RNGTRQYCSL ACQNRVKAAA FRERRAT
Length:187
Mass (Da):20,661
Last modified:April 4, 2006 - v1
Checksum:i80DF5944C1AF2510
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000264 Genomic DNA. Translation: ABD55328.1.
RefSeqiWP_011455532.1. NC_007802.1.

Genome annotation databases

EnsemblBacteriaiABD55328; ABD55328; Jann_2411.
KEGGijan:Jann_2411.
PATRICi22148598. VBIJanSp43325_2562.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000264 Genomic DNA. Translation: ABD55328.1.
RefSeqiWP_011455532.1. NC_007802.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3H0NX-ray1.45A1-187[»]
ProteinModelPortaliQ28PN4.
SMRiQ28PN4. Positions 1-184.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi290400.Jann_2411.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD55328; ABD55328; Jann_2411.
KEGGijan:Jann_2411.
PATRICi22148598. VBIJanSp43325_2562.

Phylogenomic databases

eggNOGiENOG4105RUK. Bacteria.
ENOG4112090. LUCA.
HOGENOMiHOG000220053.
OMAiHDGEPWH.
OrthoDBiEOG6XM7HB.

Enzyme and pathway databases

BioCyciJSP290400:GI1R-2432-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ28PN4.

Family and domain databases

Gene3Di1.10.3300.10. 1 hit.
InterProiIPR010852. ABATE.
IPR023286. ABATE_dom.
IPR021005. Znf_CGNR.
[Graphical view]
PfamiPF07336. ABATE. 1 hit.
PF11706. zf-CGNR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCS1Imported.
  2. "The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45A resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator."
    Bakolitsa C., Bateman A., Jin K.K., McMullan D., Krishna S.S., Miller M.D., Abdubek P., Acosta C., Astakhova T., Axelrod H.L., Burra P., Carlton D., Chiu H.J., Clayton T., Das D., Deller M.C., Duan L., Elias Y.
    , Feuerhelm J., Grant J.C., Grzechnik A., Grzechnik S.K., Han G.W., Jaroszewski L., Klock H.E., Knuth M.W., Kozbial P., Kumar A., Marciano D., Morse A.T., Murphy K.D., Nigoghossian E., Okach L., Oommachen S., Paulsen J., Reyes R., Rife C.L., Sefcovic N., Tien H., Trame C.B., Trout C.V., van den Bedem H., Weekes D., White A., Xu Q., Hodgson K.O., Wooley J., Elsliger M.A., Deacon A.M., Godzik A., Lesley S., Wilson I.A.
    Acta Crystallogr. F 66:1198-1204(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.45 ANGSTROMS) IN COMPLEX WITH ZINC.

Entry informationi

Entry nameiQ28PN4_JANSC
AccessioniPrimary (citable) accession number: Q28PN4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: April 13, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.