Q28NX8 (Q28NX8_JANSC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABD55584.1

Gene names

Ordered Locus Names:

Jann_2667 EMBL ABD55584.1

Organism

Jannaschia sp. (strain CCS1) [Complete proteome] [HAMAP] EMBL ABD55584.1

Taxonomic identifier

290400 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Jannaschia

Protein attributes

Sequence length	532 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABD55584.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q28NX8 [UniParc]. Last modified April 4, 2006. Version 1. Checksum: 66347680C532B84E	FASTA	532	60,315
	10 20 30 40 50 60 MKAFAALFTT LDQTTKTSVK TAALADYFRT APEDDRIWTI ALLSGRRPRR TITTTKLREW 70 80 90 100 110 120 AAERAGIPLW LFEACYPVVG DLSETIALVL PEPETRIDKS LSAWIATLRG LDNAEEDARK 130 140 150 160 170 180 AAILEAWNGL PPIERFVFNK LITGGWRMGV SQKLMTRALS KATDIDEAEL THRLMGDWSP 190 200 210 220 230 240 DTVSWDGLIE APDPTTNLSR PYPFYLAYQL EGDAEDQGGV GDWVAERKWD GIRGQLIMRG 250 260 270 280 290 300 GERYLWSRGE DLMTDRFPEF AQLLDYLPSG TVLDGEVLAY DFVNNTPLSF NKLQPRIGRK 310 320 330 340 350 360 TVPKKLLAEA PCILMAYDLL EWQGADIRHR PLAERRALLE EATDNMPPDA PLRLSPRVEA 370 380 390 400 410 420 ESWDDLRAAR AISRDIGAEG LMLKRLSAPY LAGRKKGDWW KWKVDPLTID AVMIYAQAGS 430 440 450 460 470 480 GRRATLYTDF TFAVWNGPDL VPFTKAYSGL TDKEFREITA WVRKNTTDRF GPVRAVTPHH 490 500 510 520 530 VFEIAFEGIQ PSPRHKSGVA LRFPRMLRWR KDKPLEEANT LDDLNQMLEQ YG

References

[1]

"Complete sequence of chromosome of Jannaschia sp. CCS1." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Chertkov O., Saunders E., Schmutz J., Larimer F. , Land M., Kyrpides N., Lykidis A., Moran M.A., Belas R., Ye W., Buchan A., Gonzalez J.M., Schell M.A., Richardson P. Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CCS1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000264 Genomic DNA. Translation: ABD55584.1.
RefSeq	YP_510609.1. NC_007802.1.
3D structure databases
ProteinModelPortal	Q28NX8.
ModBase	Search...
Protein-protein interaction databases
STRING	290400.Jann_2667.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABD55584; ABD55584; Jann_2667.
GeneID	3935131.
KEGG	jan:Jann_2667.
PATRIC	22149158. VBIJanSp43325_2835.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	JSP290400:GI1R-2720-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q28NX8_JANSC

Accession

Primary (citable) accession number: Q28NX8

Entry history

Integrated into UniProtKB/TrEMBL:	April 4, 2006
Last sequence update:	April 4, 2006
Last modified:	May 1, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)