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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Jann_2667

Organism
Jannaschia sp. (strain CCS1)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciJSP290400:GI1R-2695-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Jann_2667Imported
OrganismiJannaschia sp. (strain CCS1)Imported
Taxonomic identifieri290400 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeJannaschia
ProteomesiUP000008326 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi290400.Jann_2667.

Structurei

3D structure databases

ProteinModelPortaliQ28NX8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiWIRQNTI.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q28NX8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAFAALFTT LDQTTKTSVK TAALADYFRT APEDDRIWTI ALLSGRRPRR
60 70 80 90 100
TITTTKLREW AAERAGIPLW LFEACYPVVG DLSETIALVL PEPETRIDKS
110 120 130 140 150
LSAWIATLRG LDNAEEDARK AAILEAWNGL PPIERFVFNK LITGGWRMGV
160 170 180 190 200
SQKLMTRALS KATDIDEAEL THRLMGDWSP DTVSWDGLIE APDPTTNLSR
210 220 230 240 250
PYPFYLAYQL EGDAEDQGGV GDWVAERKWD GIRGQLIMRG GERYLWSRGE
260 270 280 290 300
DLMTDRFPEF AQLLDYLPSG TVLDGEVLAY DFVNNTPLSF NKLQPRIGRK
310 320 330 340 350
TVPKKLLAEA PCILMAYDLL EWQGADIRHR PLAERRALLE EATDNMPPDA
360 370 380 390 400
PLRLSPRVEA ESWDDLRAAR AISRDIGAEG LMLKRLSAPY LAGRKKGDWW
410 420 430 440 450
KWKVDPLTID AVMIYAQAGS GRRATLYTDF TFAVWNGPDL VPFTKAYSGL
460 470 480 490 500
TDKEFREITA WVRKNTTDRF GPVRAVTPHH VFEIAFEGIQ PSPRHKSGVA
510 520 530
LRFPRMLRWR KDKPLEEANT LDDLNQMLEQ YG
Length:532
Mass (Da):60,315
Last modified:April 4, 2006 - v1
Checksum:i66347680C532B84E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000264 Genomic DNA. Translation: ABD55584.1.
RefSeqiWP_011455788.1. NC_007802.1.
YP_510609.1. NC_007802.1.

Genome annotation databases

EnsemblBacteriaiABD55584; ABD55584; Jann_2667.
GeneIDi3935131.
KEGGijan:Jann_2667.
PATRICi22149158. VBIJanSp43325_2835.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000264 Genomic DNA. Translation: ABD55584.1.
RefSeqiWP_011455788.1. NC_007802.1.
YP_510609.1. NC_007802.1.

3D structure databases

ProteinModelPortaliQ28NX8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi290400.Jann_2667.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD55584; ABD55584; Jann_2667.
GeneIDi3935131.
KEGGijan:Jann_2667.
PATRICi22149158. VBIJanSp43325_2835.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiWIRQNTI.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciJSP290400:GI1R-2695-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCS1Imported.

Entry informationi

Entry nameiQ28NX8_JANSC
AccessioniPrimary (citable) accession number: Q28NX8
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: March 4, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.