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Q28NX8 (Q28NX8_JANSC) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Jann_2667 EMBL ABD55584.1
OrganismJannaschia sp. (strain CCS1) [Complete proteome] [HAMAP] EMBL ABD55584.1
Taxonomic identifier290400 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeJannaschia

Protein attributes

Sequence length532 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q28NX8 [UniParc].

Last modified April 4, 2006. Version 1.
Checksum: 66347680C532B84E

FASTA53260,315
        10         20         30         40         50         60 
MKAFAALFTT LDQTTKTSVK TAALADYFRT APEDDRIWTI ALLSGRRPRR TITTTKLREW 

        70         80         90        100        110        120 
AAERAGIPLW LFEACYPVVG DLSETIALVL PEPETRIDKS LSAWIATLRG LDNAEEDARK 

       130        140        150        160        170        180 
AAILEAWNGL PPIERFVFNK LITGGWRMGV SQKLMTRALS KATDIDEAEL THRLMGDWSP 

       190        200        210        220        230        240 
DTVSWDGLIE APDPTTNLSR PYPFYLAYQL EGDAEDQGGV GDWVAERKWD GIRGQLIMRG 

       250        260        270        280        290        300 
GERYLWSRGE DLMTDRFPEF AQLLDYLPSG TVLDGEVLAY DFVNNTPLSF NKLQPRIGRK 

       310        320        330        340        350        360 
TVPKKLLAEA PCILMAYDLL EWQGADIRHR PLAERRALLE EATDNMPPDA PLRLSPRVEA 

       370        380        390        400        410        420 
ESWDDLRAAR AISRDIGAEG LMLKRLSAPY LAGRKKGDWW KWKVDPLTID AVMIYAQAGS 

       430        440        450        460        470        480 
GRRATLYTDF TFAVWNGPDL VPFTKAYSGL TDKEFREITA WVRKNTTDRF GPVRAVTPHH 

       490        500        510        520        530 
VFEIAFEGIQ PSPRHKSGVA LRFPRMLRWR KDKPLEEANT LDDLNQMLEQ YG 

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References

[1]"Complete sequence of chromosome of Jannaschia sp. CCS1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Chertkov O., Saunders E., Schmutz J., Larimer F. expand/collapse author list , Land M., Kyrpides N., Lykidis A., Moran M.A., Belas R., Ye W., Buchan A., Gonzalez J.M., Schell M.A., Richardson P.
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCS1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000264 Genomic DNA. Translation: ABD55584.1.
RefSeqYP_510609.1. NC_007802.1.

3D structure databases

ProteinModelPortalQ28NX8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING290400.Jann_2667.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD55584; ABD55584; Jann_2667.
GeneID3935131.
KEGGjan:Jann_2667.
PATRIC22149158. VBIJanSp43325_2835.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMANRHKSGV.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycJSP290400:GI1R-2695-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ28NX8_JANSC
AccessionPrimary (citable) accession number: Q28NX8
Entry history
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: May 14, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)