Q28I93 (Q28I93_XENTR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Novel protein containing Zn-finger in Ran binding protein and others domain and 2 GRF zinc finger domains EMBL CAJ83732.1

Gene names

Name:	neil3 Xenbase XB-GENE-1001611
ORF Names:	TEgg056p12.1-001 EMBL CAJ83732.1

Organism

Xenopus tropicalis (Western clawed frog) (Silurana tropicalis) EMBL CAJ83732.1

Taxonomic identifier

8364 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amphibia › Batrachia › Anura › Pipoidea › Pipidae › Xenopodinae › Xenopus › Silurana

Protein attributes

Sequence length	574 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	base-excision repair Inferred from electronic annotation. Source: InterPro nucleotide-excision repair Inferred from electronic annotation. Source: InterPro
Cellular_component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA-(apurinic or apyrimidinic site) lyase activity Inferred from electronic annotation. Source: InterPro damaged DNA binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing N-glycosyl compounds Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q28I93 [UniParc]. Last modified April 4, 2006. Version 1. Checksum: 66E0EECFDADEBE91	FASTA	574	64,338
	10 20 30 40 50 60 MVEGPGCTLN GEKIRARVEK GQSVVELRGS AVSGTPPSSC YNALSSLTGC SYTGVQTLGK 70 80 90 100 110 120 ELFMYFGLKA IRVHFGMNGS IRLNQAVKKG QENSRPMPVA VLEVQLEKDL ICFYESTVDV 130 140 150 160 170 180 RNVSECQEKI RFLEELDVCS SKFSFSRAEC EIKKQKARML CDILLDQMIL PGVGNIIKNE 190 200 210 220 230 240 ALFDSGLHPG VQAGLLTDMQ VSHLVKMTRD FTLLFYKCRK SGSALYKHYK VYKRPNCGQC 250 260 270 280 290 300 DKKITVCRLG ENNRMTYFCP KCQNDKPQHV DVSKLPKRNS LIGWVQRIPP HSNEHVATSK 310 320 330 340 350 360 EEHWACTVCT LINKPSDQQC DACLTQRPEV SSLAESDKAA ELDADLVKYP CNNFAKLLPE 370 380 390 400 410 420 LKLNRRTAFG NTTLVLTDFG AKEDLSDKNI QQHSLNSSTF DVPLSKHFNG KNSSNKRSNE 430 440 450 460 470 480 NEHWTNTLNA LNGGSGTSNN VFNHPQKKLK TVHQTPNKTN IRSTISSSQS TMARDAATNT 490 500 510 520 530 540 GGPNCSTHNV PCALQVVRKE GENKGRSFYT CSLPRERRCQ FFEWADLHFP FCNHGKRCIV 550 560 570 RTVLKLGPNN GKNFYVCPMG KDKQCNFFEW AKTE

References

[1]

Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K., Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V., McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J., Zorn A.M. Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR760525 mRNA. Translation: CAJ83732.1.
RefSeq	NP_001017201.1. NM_001017201.2.
UniGene	Str.6541.
3D structure databases
ProteinModelPortal	Q28I93.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	549955.
KEGG	xtr:549955.
Organism-specific databases
CTD	55247.
Xenbase	XB-GENE-1001611. neil3.
Phylogenomic databases
HOVERGEN	HBG052594.
KO	K10569.
Family and domain databases
InterPro	IPR015886. DNA_glyclase/AP_lyase_DNA-bd. IPR012319. DNA_glycosylase/AP_lyase_cat. IPR010979. Ribosomal_S13-like_H2TH. IPR000214. Znf_DNA_glyclase/AP_lyase. IPR010666. Znf_GRF. IPR001876. Znf_RanBP2. [Graphical view]
Pfam	PF06831. H2TH. 1 hit. PF06839. zf-GRF. 2 hits. PF00641. zf-RanBP. 1 hit. [Graphical view]
SMART	SM00547. ZnF_RBZ. 1 hit. [Graphical view]
SUPFAM	SSF81624. Form_DNAglyc_cat. 1 hit. SSF46946. Ribosomal_H2TH. 1 hit.
PROSITE	PS51066. ZF_FPG_2. 1 hit. PS01358. ZF_RANBP2_1. 1 hit. PS50199. ZF_RANBP2_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q28I93_XENTR

Accession

Primary (citable) accession number: Q28I93

Entry history

Integrated into UniProtKB/TrEMBL:	April 4, 2006
Last sequence update:	April 4, 2006
Last modified:	October 3, 2012
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)