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Protein
Submitted name:

Tumor differentially expressed 1

Gene

serinc3

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Tumor differentially expressed 1Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:serinc3Imported
Synonyms:tde1Imported
ORF Names:TEgg009n11.1-001Imported
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-950521. serinc3.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei40 – 6122HelicalSequence analysisAdd
BLAST
Transmembranei97 – 11923HelicalSequence analysisAdd
BLAST
Transmembranei131 – 15121HelicalSequence analysisAdd
BLAST
Transmembranei157 – 18024HelicalSequence analysisAdd
BLAST
Transmembranei201 – 22727HelicalSequence analysisAdd
BLAST
Transmembranei239 – 25719HelicalSequence analysisAdd
BLAST
Transmembranei404 – 42421HelicalSequence analysisAdd
BLAST
Transmembranei444 – 46421HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSXETG00000001778.

Interactioni

Protein-protein interaction databases

STRINGi8364.ENSXETP00000003695.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG2592. Eukaryota.
ENOG410XP7K. LUCA.
GeneTreeiENSGT00550000074522.
HOGENOMiHOG000165463.
HOVERGENiHBG025699.
OMAiISREVIF.
OrthoDBiEOG091G07WS.
TreeFamiTF312881.

Family and domain databases

InterProiIPR029557. Serinc3.
IPR005016. TDE1/TMS.
[Graphical view]
PANTHERiPTHR10383. PTHR10383. 1 hit.
PTHR10383:SF27. PTHR10383:SF27. 1 hit.
PfamiPF03348. Serinc. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q28GE2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGVLGLCSV ASWIPCLCSS ATCLLCRCCP NTGNSTVTRI VYAFLMLLGA
60 70 80 90 100
ILSCIMLSPG ISDQLKKVPG FCEDGFGTQL PHVDGYVNCN VLVGYKAVYR
110 120 130 140 150
VSFAMTLFFL AMSIFMLGVK TSKDPRAAIH NGFWFFKVLA LAGIMVGAFY
160 170 180 190 200
IPEGHFTSAW FWIGVCGACC FIIFQLILLV DFAHSLNESW VNRMEDGNSK
210 220 230 240 250
CWYAVLLSFT ILCYSLSIIG VVLLYVYYTK SDGCTENKFF ISFNMILCVI
260 270 280 290 300
VSVISILPKV QEHQPRSGLL QSSVITLYTM YLTWSSMSNE PDRSCNPSLL
310 320 330 340 350
SIISTINSPA IIPSNETILE PTPEPIKALQ WWDSQNIIGF ILFVACLMYS
360 370 380 390 400
SIRNTTNSQV NKLTLSSNDT VILDDTTGSS DAEDGEVKRV IDNEKDGVQY
410 420 430 440 450
NYSLFLFMLC LSSLYIMMTL TNWYSPTADT KTMTSTWPAV WFKISSSWVC
460 470
LLLYFWTLIA PIVLSNRDFS
Length:470
Mass (Da):52,374
Last modified:April 4, 2006 - v1
Checksum:i8E254AB42F39A983
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01020297 Genomic DNA. No translation available.
CR761424 mRNA. Translation: CAJ82242.1.
RefSeqiNP_001016331.1. NM_001016331.2.
UniGeneiStr.1226.

Genome annotation databases

EnsembliENSXETT00000003695; ENSXETP00000003695; ENSXETG00000001778.
GeneIDi549085.
KEGGixtr:549085.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAMC01020297 Genomic DNA. No translation available.
CR761424 mRNA. Translation: CAJ82242.1.
RefSeqiNP_001016331.1. NM_001016331.2.
UniGeneiStr.1226.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi8364.ENSXETP00000003695.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSXETT00000003695; ENSXETP00000003695; ENSXETG00000001778.
GeneIDi549085.
KEGGixtr:549085.

Organism-specific databases

CTDi10955.
XenbaseiXB-GENE-950521. serinc3.

Phylogenomic databases

eggNOGiKOG2592. Eukaryota.
ENOG410XP7K. LUCA.
GeneTreeiENSGT00550000074522.
HOGENOMiHOG000165463.
HOVERGENiHBG025699.
OMAiISREVIF.
OrthoDBiEOG091G07WS.
TreeFamiTF312881.

Gene expression databases

BgeeiENSXETG00000001778.

Family and domain databases

InterProiIPR029557. Serinc3.
IPR005016. TDE1/TMS.
[Graphical view]
PANTHERiPTHR10383. PTHR10383. 1 hit.
PTHR10383:SF27. PTHR10383:SF27. 1 hit.
PfamiPF03348. Serinc. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ28GE2_XENTR
AccessioniPrimary (citable) accession number: Q28GE2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: September 7, 2016
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.