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Protein

Protein SREK1IP1

Gene

srek1ip1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Possible splicing regulator involved in the control of cellular survival.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri13 – 30CCHC-typePROSITE-ProRule annotationAdd BLAST18

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processmRNA processing, mRNA splicing
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Protein SREK1IP1
Gene namesi
Name:srek1ip1
Synonyms:sfrs12ip1
ORF Names:TNeu060i09.1
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-6454409. srek1ip1.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003119261 – 155Protein SREK1IP1Add BLAST155

Proteomic databases

PaxDbiQ28EE8.

Expressioni

Gene expression databases

BgeeiENSXETG00000000461.
ExpressionAtlasiQ28EE8. baseline.

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi66 – 138Lys-richAdd BLAST73
Compositional biasi139 – 154Ser-richAdd BLAST16

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri13 – 30CCHC-typePROSITE-ProRule annotationAdd BLAST18

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG2985. Eukaryota.
ENOG41124J3. LUCA.
GeneTreeiENSGT00510000047710.
InParanoidiQ28EE8.
OMAiKSKRGKH.
TreeFamiTF318225.

Family and domain databases

InterProiView protein in InterPro
IPR001878. Znf_CCHC.
PROSITEiView protein in PROSITE
PS50158. ZF_CCHC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q28EE8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAVPGVNKDN IRAGCKKCGY PGHLTFECRN FLRVDPQRDI VLDVSSTSTE
60 70 80 90 100
DSEDESEEVA RAPADKKNVT DTGKKKLKRK KEKKLKKHRK RLHSSSESDD
110 120 130 140 150
NSKAKKRKSQ KKEKRVKHKA KKGKQHKKDK RKEKRERKSS SSSSSSSSSQ

SSSSD
Length:155
Mass (Da):17,571
Last modified:April 4, 2006 - v1
Checksum:i0606402AC56BFC9B
GO

Sequence cautioni

The sequence AAI35676 differs from that shown. Reason: Frameshift at position 107.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR848286 mRNA. Translation: CAJ82692.1.
BC135675 mRNA. Translation: AAI35676.1. Frameshift.
RefSeqiNP_001015999.1. NM_001015999.2.
UniGeneiStr.64789.

Genome annotation databases

EnsembliENSXETT00000062714; ENSXETP00000060502; ENSXETG00000000461.
GeneIDi548753.
KEGGixtr:548753.

Similar proteinsi

Entry informationi

Entry nameiSR1IP_XENTR
AccessioniPrimary (citable) accession number: Q28EE8
Secondary accession number(s): A4QNH3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: April 4, 2006
Last modified: February 28, 2018
This is version 56 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome