Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q28EB8 (Q28EB8_XENTR) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Protein attributes

Sequence length911 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
Q28EB8 [UniParc].

Last modified April 4, 2006. Version 1.
Checksum: 227B0C2705291ACC

FASTA911103,871
        10         20         30         40         50         60 
MSATKASDSA AERTVASQVP FADLCCTLEK VQKCKNRTEK SHIFKQFVDS WRKFHEALHK 

        70         80         90        100        110        120 
SQPKTTDSFY PAMRLVVPQL ERERMAYGIK ETMLAKLYIK VLGLPKEGKD AIKLLNYRSP 

       130        140        150        160        170        180 
TSSHSDAGDF AAIAYFVLKS RCRKEGSLSI QEVNYHLDSI ANNNAAKKKE LIEKSLLHLI 

       190        200        210        220        230        240 
ANTTALEQKW LIRMIIKDMK LGFSQQTVFS IFHPDAAELH NVTTDLEKVC IQLHDPNVCL 

       250        260        270        280        290        300 
SDVSISMFSA FKPMLAAIAN IQNIEKQMNH QSFYIETKLD GERMQMHKDG DVYKYFSRNG 

       310        320        330        340        350        360 
FDYTQQFGAS PLEGSLTPYI HNAFSLNIQN CILDGEMMAY NPNTQTFMQK GNKFDIKRMV 

       370        380        390        400        410        420 
DDSELQTCYC VFDVLLLNDQ KLAHETLRKR YDILQEIFIP IPGRFHIVDK TEASTKKNVV 

       430        440        450        460        470        480 
DALNEAIDKR EEGIMVKDPM SIYKPDKRGE GWLKIKPEYV NGLMDELDLI IIGGYWGKGS 

       490        500        510        520        530        540 
RGGMMSHFLC GVAEASGPGE KPSVFHSICR VGSGYTMKEL FDLGLKLAPH WKTYRKRDPP 

       550        560        570        580        590        600 
SNILCGIEKP EAYIQPCNSV IVQIKAAEIV TSDMYKTGCT LRFPRIEKIR EDKEWYDCMT 

       610        620        630        640        650        660 
LDDLEQFRDK ASGKLASKHL HIDDEPHEKK RKTAPKLKKV IGIVSHLKAP DLSNVYQESS 

       670        680        690        700        710        720 
VFAEVEFCVM SGTDTHSKDD LANIIAKCGG IGVQNPGADT YCVIAGTENV RVKNIICSNK 

       730        740        750        760        770        780 
HDVVKAAWLL ECFESKTFVP WQPHHMIHMC PSTAEHFACE YDCYGDSYIT DTSEYQLREV 

       790        800        810        820        830        840 
FHRMSNIREK IPFEMMADLE ERYSWNNSSH SFFRHCTVYV DSFATINDPT TRINTSSLNL 

       850        860        870        880        890        900 
RALELRFYGA KLVNQLEEGI SHVVVGEDLS RLEQMKTMRR AIAKKFKIVS VSWVLDSVKM 

       910 
RVPQMENSYL L 

« Hide

References

« Hide 'large scale' references
[1]Amaya E., Ashurst J.L., Bonfield J.K., Croning M.D.R., Chen C-K., Davies R.M., Francis M.D., Garrett N., Gilchrist M.J., Grafham D.V., McLaren S.R., Papalopulu N., Rogers J., Smith J.C., Taylor R.G., Voigt J., Zorn A.M.
Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]NIH - Xenopus Gene Collection (XGC) project
Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Whole embryo EMBL AAI35342.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC135341 mRNA. Translation: AAI35342.1.
CR848338 mRNA. Translation: CAJ82384.1.
RefSeqNP_001016981.1. NM_001016981.2.
UniGeneStr.4239.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING8364.ENSXETP00000005699.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID549735.
KEGGxtr:549735.

Organism-specific databases

CTD3981.
XenbaseXB-GENE-964443. lig4.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000007831.
HOVERGENHBG005516.
KOK10777.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR021536. DNA_ligase_IV.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 2 hits.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF11411. DNA_ligase_IV. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ28EB8_XENTR
AccessionPrimary (citable) accession number: Q28EB8
Entry history
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: October 16, 2013
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)