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Protein
Submitted name:

Vascular cell adhesion molecule

Gene
N/A
Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Vascular cell adhesion moleculeImported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei499 – 519HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_500420364221 – 538Sequence analysisAdd BLAST518

Proteomic databases

PaxDbiQ28939.
PRIDEiQ28939.

Expressioni

Gene expression databases

GenevisibleiQ28939. SS.

Interactioni

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000007316.

Structurei

3D structure databases

ProteinModelPortaliQ28939.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 112Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST111
Domaini224 – 305Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST82
Domaini310 – 394Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST85
Domaini399 – 483Ig-like (immunoglobulin-like)InterPro annotationAdd BLAST85

Keywords - Domaini

Immunoglobulin domainSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IIKS. Eukaryota.
ENOG4111F4V. LUCA.
HOGENOMiHOG000004820.
HOVERGENiHBG053965.
KOiK06527.

Family and domain databases

Gene3Di2.60.40.10. 5 hits.
InterProiIPR003987. ICAM_VCAM_N.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR008424. Ig_C2-set.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
IPR013151. Immunoglobulin.
IPR003989. VCAM-1.
[Graphical view]
PfamiPF05790. C2-set. 1 hit.
PF07679. I-set. 1 hit.
PF00047. ig. 1 hit.
[Graphical view]
PRINTSiPR01472. ICAMVCAM1.
PR01474. VCAM1.
SMARTiSM00409. IG. 4 hits.
SM00408. IGc2. 4 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 5 hits.
PROSITEiPS50835. IG_LIKE. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q28939-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRNIVVIFG ASNILWMVFA VSQNVKVEIF PEDKMIAQIG DSASLTCSAP
60 70 80 90 100
DCESSLSFSW RTQIDSPLNG KVKTNGTRST LVMNPVSFEN EHSYLCTVSC
110 120 130 140 150
GNLKGERGIQ VEIYSFPKDP EIHWSSLPEV GKPVTVRCLV PDVYPVEKLE
160 170 180 190 200
IELLKDNHSM VSQNFLELID IKSKETKSLE FTFTPTEEDI GKAIVCQATL
210 220 230 240 250
IIDGQPSVKT TPEKMQVYIS PKDPVISVNP STSLQEGDSM MMTCTSEGLP
260 270 280 290 300
APQISWSKKL DNGDQQLLSG NATLTLIAMR MEDSGIYVCE GVNPVGTNRK
310 320 330 340 350
EVELTVQVAP RDTTISVNPS STLEEGSSVN MTCSSDGFPA PKILWSKKLR
360 370 380 390 400
DGNLEPLSEN TTLTLTSTKM EDSGIYVCEG INQAGINRKE VELIIQAAPK
410 420 430 440 450
DLQLTAFPSE SVKEGDTVII SCTCGNVPPT LIILKKKAET GDTVLKSTDG
460 470 480 490 500
AYTIHRARLA DAGVYECESK NEIGLQLRSI TLDVKGRESN KDYFSSELLV
510 520 530
LYCASSLIIP AIGVIIYFAR KANMRGSYSL VDAQKSKV
Length:538
Mass (Da):58,795
Last modified:November 1, 1996 - v1
Checksum:iEC29D11B224F7261
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U08351 mRNA. Translation: AAA21542.1.
PIRiJC2457.
RefSeqiNP_999056.1. NM_213891.1.
UniGeneiSsc.14522.

Genome annotation databases

GeneIDi396925.
KEGGissc:396925.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U08351 mRNA. Translation: AAA21542.1.
PIRiJC2457.
RefSeqiNP_999056.1. NM_213891.1.
UniGeneiSsc.14522.

3D structure databases

ProteinModelPortaliQ28939.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9823.ENSSSCP00000007316.

Proteomic databases

PaxDbiQ28939.
PRIDEiQ28939.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi396925.
KEGGissc:396925.

Organism-specific databases

CTDi7412.

Phylogenomic databases

eggNOGiENOG410IIKS. Eukaryota.
ENOG4111F4V. LUCA.
HOGENOMiHOG000004820.
HOVERGENiHBG053965.
KOiK06527.

Gene expression databases

GenevisibleiQ28939. SS.

Family and domain databases

Gene3Di2.60.40.10. 5 hits.
InterProiIPR003987. ICAM_VCAM_N.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR008424. Ig_C2-set.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
IPR013151. Immunoglobulin.
IPR003989. VCAM-1.
[Graphical view]
PfamiPF05790. C2-set. 1 hit.
PF07679. I-set. 1 hit.
PF00047. ig. 1 hit.
[Graphical view]
PRINTSiPR01472. ICAMVCAM1.
PR01474. VCAM1.
SMARTiSM00409. IG. 4 hits.
SM00408. IGc2. 4 hits.
[Graphical view]
SUPFAMiSSF48726. SSF48726. 5 hits.
PROSITEiPS50835. IG_LIKE. 4 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ28939_PIG
AccessioniPrimary (citable) accession number: Q28939
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: October 5, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.