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Protein
Submitted name:

Vascular cell adhesion molecule

Gene
N/A
Organism
Sus scrofa (Pig)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Vascular cell adhesion moleculeImported
OrganismiSus scrofa (Pig)Imported
Taxonomic identifieri9823 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaSuinaSuidaeSus

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei499 – 519HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 20Sequence analysisAdd BLAST20
ChainiPRO_500420364221 – 538Sequence analysisAdd BLAST518

Proteomic databases

PaxDbiQ28939.
PRIDEiQ28939.

Expressioni

Gene expression databases

GenevisibleiQ28939. SS.

Structurei

3D structure databases

ProteinModelPortaliQ28939.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 112Ig-likeInterPro annotationAdd BLAST111
Domaini224 – 305Ig-likeInterPro annotationAdd BLAST82
Domaini310 – 394Ig-likeInterPro annotationAdd BLAST85
Domaini399 – 483Ig-likeInterPro annotationAdd BLAST85

Keywords - Domaini

Immunoglobulin domainSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IIKS. Eukaryota.
ENOG4111F4V. LUCA.
HOGENOMiHOG000004820.
HOVERGENiHBG053965.
KOiK06527.

Family and domain databases

Gene3Di2.60.40.10. 4 hits.
InterProiView protein in InterPro
IPR003987. ICAM_VCAM_N.
IPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR008424. Ig_C2-set.
IPR013098. Ig_I-set.
IPR003599. Ig_sub.
IPR003598. Ig_sub2.
IPR013151. Immunoglobulin.
IPR003989. VCAM-1.
PfamiView protein in Pfam
PF05790. C2-set. 1 hit.
PF07679. I-set. 1 hit.
PF00047. ig. 1 hit.
PRINTSiPR01472. ICAMVCAM1.
PR01474. VCAM1.
SMARTiView protein in SMART
SM00409. IG. 4 hits.
SM00408. IGc2. 4 hits.
SUPFAMiSSF48726. SSF48726. 5 hits.
PROSITEiView protein in PROSITE
PS50835. IG_LIKE. 4 hits.

Sequencei

Sequence statusi: Complete.

Q28939-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRNIVVIFG ASNILWMVFA VSQNVKVEIF PEDKMIAQIG DSASLTCSAP
60 70 80 90 100
DCESSLSFSW RTQIDSPLNG KVKTNGTRST LVMNPVSFEN EHSYLCTVSC
110 120 130 140 150
GNLKGERGIQ VEIYSFPKDP EIHWSSLPEV GKPVTVRCLV PDVYPVEKLE
160 170 180 190 200
IELLKDNHSM VSQNFLELID IKSKETKSLE FTFTPTEEDI GKAIVCQATL
210 220 230 240 250
IIDGQPSVKT TPEKMQVYIS PKDPVISVNP STSLQEGDSM MMTCTSEGLP
260 270 280 290 300
APQISWSKKL DNGDQQLLSG NATLTLIAMR MEDSGIYVCE GVNPVGTNRK
310 320 330 340 350
EVELTVQVAP RDTTISVNPS STLEEGSSVN MTCSSDGFPA PKILWSKKLR
360 370 380 390 400
DGNLEPLSEN TTLTLTSTKM EDSGIYVCEG INQAGINRKE VELIIQAAPK
410 420 430 440 450
DLQLTAFPSE SVKEGDTVII SCTCGNVPPT LIILKKKAET GDTVLKSTDG
460 470 480 490 500
AYTIHRARLA DAGVYECESK NEIGLQLRSI TLDVKGRESN KDYFSSELLV
510 520 530
LYCASSLIIP AIGVIIYFAR KANMRGSYSL VDAQKSKV
Length:538
Mass (Da):58,795
Last modified:November 1, 1996 - v1
Checksum:iEC29D11B224F7261
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U08351 mRNA. Translation: AAA21542.1.
PIRiJC2457.
RefSeqiNP_999056.1. NM_213891.1.
UniGeneiSsc.14522.

Genome annotation databases

GeneIDi396925.
KEGGissc:396925.

Similar proteinsi

Entry informationi

Entry nameiQ28939_PIG
AccessioniPrimary (citable) accession number: Q28939
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 27, 2017
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)