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Protein

Protein VP2

Gene

ORF2

Organism
Bovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) (BEC)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus (By similarity).By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Protein VP2
Alternative name(s):
Minor capsid VP2
Gene namesi
ORF Names:ORF2
OrganismiBovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) (BEC)
Taxonomic identifieri331642 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNebovirus
Virus hostiBos taurus (Bovine) [TaxID: 9913]
ProteomesiUP000000668 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Host cytoplasm, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 225225Protein VP2PRO_0000402465Add
BLAST

Interactioni

Subunit structurei

May interact with capsid protein.By similarity

Sequencei

Sequence statusi: Complete.

Q288N6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASAATAGLT LLSGGASIAA DIASIVTEQQ RLALQKEQIR NNYELGKQSL
60 70 80 90 100
SLQQQAMENS RDRIRLSAAQ IKELGLDPKS ELNMLMGLTA GAQPPISTPI
110 120 130 140 150
SSEQLFLNSS NLARSVRWDA RNFGEAINTF AGLRAKHQAN PNRPDMMLGS
160 170 180 190 200
DNPNWGARAT GDALSVSGLS VRSNHFGSGP SSLGSLSSVR SNPFSSISSG
210 220
SVGGISLRTV GSRPSIRSVF STTSV
Length:225
Mass (Da):23,645
Last modified:April 4, 2006 - v1
Checksum:iBDAB4A19F9693869
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ013304 Genomic RNA. Translation: AAY60850.1.
RefSeqiYP_529551.1. NC_007916.1.

Genome annotation databases

GeneIDi5130543.
KEGGivg:5130543.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ013304 Genomic RNA. Translation: AAY60850.1.
RefSeqiYP_529551.1. NC_007916.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi5130543.
KEGGivg:5130543.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "Genomic characterization of the unclassified bovine enteric virus Newbury agent-1 (Newbury1) endorses a new genus in the family Caliciviridae."
    Oliver S.L., Asobayire E., Dastjerdi A.M., Bridger J.C.
    Virology 350:240-250(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Entry informationi

Entry nameiVP2_BECN1
AccessioniPrimary (citable) accession number: Q288N6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: April 4, 2006
Last modified: June 24, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Miscellaneous

Translated by a ribosomal termination-reinitiation process from the bicistronic mRNA coding for VP1 and VP2.By similarity

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.