Q288N6 (VP2_BECN1) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Protein VP2

Alternative name(s):
Minor capsid VP2

Gene names

ORF Names:

ORF2

Organism

Bovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) (BEC) [Reference proteome]

Taxonomic identifier

331642 [NCBI]

Taxonomic lineage

Viruses › ssRNA viruses › ssRNA positive-strand viruses, no DNA stage › Caliciviridae › Nebovirus › Newbury-1 virus

Virus host

Bos taurus (Bovine) [TaxID: 9913]

Protein attributes

Sequence length	225 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.
Subunit structure	May interact with capsid protein By similarity.
Subcellular location	Virion. Host cytoplasm By similarity.
Miscellaneous	Translated by a ribosomal termination-reinitiation process from the bicistronic mRNA encoding for VP1 and VP2 By similarity.

Ontologies

Keywords
Cellular component	Host cytoplasm Virion
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular_component	host cell cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell virion Inferred from electronic annotation. Source: UniProtKB-SubCell
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 225	225	Protein VP2		PRO_0000402465

Sequences

	Sequence		Length	Mass (Da)
	Q288N6 [UniParc]. Last modified April 4, 2006. Version 1. Checksum: BDAB4A19F9693869	FASTA	225	23,645
	10 20 30 40 50 60 MASAATAGLT LLSGGASIAA DIASIVTEQQ RLALQKEQIR NNYELGKQSL SLQQQAMENS 70 80 90 100 110 120 RDRIRLSAAQ IKELGLDPKS ELNMLMGLTA GAQPPISTPI SSEQLFLNSS NLARSVRWDA 130 140 150 160 170 180 RNFGEAINTF AGLRAKHQAN PNRPDMMLGS DNPNWGARAT GDALSVSGLS VRSNHFGSGP 190 200 210 220 SSLGSLSSVR SNPFSSISSG SVGGISLRTV GSRPSIRSVF STTSV

References

[1]

"Genomic characterization of the unclassified bovine enteric virus Newbury agent-1 (Newbury1) endorses a new genus in the family Caliciviridae." Oliver S.L., Asobayire E., Dastjerdi A.M., Bridger J.C. Virology 350:240-250(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	DQ013304 Genomic RNA. Translation: AAY60850.1.
RefSeq	YP_529551.1. NC_007916.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5130543.
Family and domain databases
ProtoNet	Search...

Entry information

Entry name

VP2_BECN1

Accession

Primary (citable) accession number: Q288N6

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 30, 2010
Last sequence update:	April 4, 2006
Last modified:	February 6, 2013
This is version 13 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Viral Protein Annotation Program