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Q288N6 (VP2_BECN1) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Protein VP2
Alternative name(s):
Minor capsid VP2
Gene names
ORF Names:ORF2
OrganismBovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) (BEC) [Reference proteome]
Taxonomic identifier331642 [NCBI]
Taxonomic lineageVirusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNebovirus
Virus hostBos taurus (Bovine) [TaxID: 9913]

Protein attributes

Sequence length225 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Minor structural protein present in one or two copies per virion. Does not seem to play a role in capsid assembly, but is essential for production of infectious virus By similarity.

Subunit structure

May interact with capsid protein By similarity.

Subcellular location

Virion. Host cytoplasm By similarity.

Miscellaneous

Translated by a ribosomal termination-reinitiation process from the bicistronic mRNA coding for VP1 and VP2 By similarity.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Virion
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

virion

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 225225Protein VP2
PRO_0000402465

Sequences

Sequence LengthMass (Da)Tools
Q288N6 [UniParc].

Last modified April 4, 2006. Version 1.
Checksum: BDAB4A19F9693869

FASTA22523,645
        10         20         30         40         50         60 
MASAATAGLT LLSGGASIAA DIASIVTEQQ RLALQKEQIR NNYELGKQSL SLQQQAMENS 

        70         80         90        100        110        120 
RDRIRLSAAQ IKELGLDPKS ELNMLMGLTA GAQPPISTPI SSEQLFLNSS NLARSVRWDA 

       130        140        150        160        170        180 
RNFGEAINTF AGLRAKHQAN PNRPDMMLGS DNPNWGARAT GDALSVSGLS VRSNHFGSGP 

       190        200        210        220 
SSLGSLSSVR SNPFSSISSG SVGGISLRTV GSRPSIRSVF STTSV 

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References

[1]"Genomic characterization of the unclassified bovine enteric virus Newbury agent-1 (Newbury1) endorses a new genus in the family Caliciviridae."
Oliver S.L., Asobayire E., Dastjerdi A.M., Bridger J.C.
Virology 350:240-250(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DQ013304 Genomic RNA. Translation: AAY60850.1.
RefSeqYP_529551.1. NC_007916.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5130543.

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameVP2_BECN1
AccessionPrimary (citable) accession number: Q288N6
Entry history
Integrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: April 4, 2006
Last modified: May 29, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program