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Protein
Submitted name:

P-selectin

Gene
N/A
Organism
Oryctolagus cuniculus (Rabbit)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

LectinImported

Names & Taxonomyi

Protein namesi
Submitted name:
P-selectinImported
OrganismiOryctolagus cuniculus (Rabbit)Imported
Taxonomic identifieri9986 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresLagomorphaLeporidaeOryctolagus

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei591 – 61424HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ28657.
SMRiQ28657. Positions 42-199.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 159121C-type lectinInterPro annotationAdd
BLAST
Domaini159 – 19537EGF-likeInterPro annotationAdd
BLAST
Domaini211 – 25949Sushi (CCP/SCR)InterPro annotationAdd
BLAST
Domaini260 – 32162Sushi (CCP/SCR)InterPro annotationAdd
BLAST
Domaini335 – 38652Sushi (CCP/SCR)InterPro annotationAdd
BLAST
Domaini387 – 44862Sushi (CCP/SCR)InterPro annotationAdd
BLAST
Domaini459 – 52062Sushi (CCP/SCR)InterPro annotationAdd
BLAST
Domaini521 – 58262Sushi (CCP/SCR)InterPro annotationAdd
BLAST

Sequence similaritiesi

Contains C-type lectin domain.SAAS annotation

Keywords - Domaini

EGF-like domainSAAS annotation, RepeatSAAS annotation, SushiSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOVERGENiHBG052375.
KOiK06496.

Family and domain databases

Gene3Di3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP_dom.
[Graphical view]
PfamiPF00008. EGF. 1 hit.
PF00059. Lectin_C. 1 hit.
PF00084. Sushi. 6 hits.
[Graphical view]
PRINTSiPR00343. SELECTIN.
SMARTiSM00032. CCP. 6 hits.
SM00034. CLECT. 1 hit.
SM00181. EGF. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 1 hit.
SSF57535. SSF57535. 6 hits.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 1 hit.
PS50923. SUSHI. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q28657-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASCPKAIWN WRFQRAVFRT VQLLCFSVLI FEVINQKEVS AWTYHYSNKT
60 70 80 90 100
YSWNYSRAFC QKYYTDLVAI QNKNEIDYLN ETIPYYNSYY WIGIRKDQQI
110 120 130 140 150
NGTWVGNKNL TEEAENWADN EPNNKRNNQD CVEIYIKSLS APGKWNDEPC
160 170 180 190 200
WKRKRALCYR ASCQDMSCSK QGECIETIGN YTCSCYPGFY GPECEYVREW
210 220 230 240 250
ASLDLPQHVH MNCSHPLGNF SFNSHCSFHC ADGYALNGPS ELECLASGIW
260 270 280 290 300
TNSPPQCVAV QCPALKSPEQ GSMSCVQSAE AFQHQSSCSF SCEEGFELVG
310 320 330 340 350
PEVVHCTALG VWTAPTPVCK ALQCQDLPTS TKARVNCSHP FGDFRYQSIW
360 370 380 390 400
SFHVVHCDEG SFLVGASVLQ CLDTGNWDAP FPECQAVTCA ALPNPQNGEK
410 420 430 440 450
TCVQPLGGSS YESTCWFTCH EGFPLSGPER LDCTPSGHWT GSPPTCEEVD
460 470 480 490 500
TVSAPAPGVQ CPTLIAPKEG TMSCQHHVRN FGLNTTCHFG CKAGFTLLGD
510 520 530 540 550
SALQCRPSRQ WTAAAPTCRA VKCAKLPVTE PIVMNCSNPW GNFSYGSTCS
560 570 580 590 600
FHCPEGQLLN GSERTVCQEN VQWSTTMPTC QAGPLTIQET LTYVGGAAAG
610 620 630 640
TTGLVTGSIL LALLRRRCRQ KDDGKSPLNP QSHLGTYGVF TNAAFDPSP
Length:649
Mass (Da):71,756
Last modified:November 1, 1996 - v1
Checksum:iECCD8C847B84BC31
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U39446 mRNA. Translation: AAA81385.1.
RefSeqiNP_001076224.1. NM_001082755.1.
UniGeneiOcu.2038.

Genome annotation databases

GeneIDi100009534.
KEGGiocu:100009534.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U39446 mRNA. Translation: AAA81385.1.
RefSeqiNP_001076224.1. NM_001082755.1.
UniGeneiOcu.2038.

3D structure databases

ProteinModelPortaliQ28657.
SMRiQ28657. Positions 42-199.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100009534.
KEGGiocu:100009534.

Organism-specific databases

CTDi6403.

Phylogenomic databases

HOVERGENiHBG052375.
KOiK06496.

Family and domain databases

Gene3Di3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR018378. C-type_lectin_CS.
IPR016187. C-type_lectin_fold.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP_dom.
[Graphical view]
PfamiPF00008. EGF. 1 hit.
PF00059. Lectin_C. 1 hit.
PF00084. Sushi. 6 hits.
[Graphical view]
PRINTSiPR00343. SELECTIN.
SMARTiSM00032. CCP. 6 hits.
SM00034. CLECT. 1 hit.
SM00181. EGF. 2 hits.
[Graphical view]
SUPFAMiSSF56436. SSF56436. 1 hit.
SSF57535. SSF57535. 6 hits.
PROSITEiPS00615. C_TYPE_LECTIN_1. 1 hit.
PS50041. C_TYPE_LECTIN_2. 1 hit.
PS00022. EGF_1. 1 hit.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 1 hit.
PS50923. SUSHI. 6 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ28657_RABIT
AccessioniPrimary (citable) accession number: Q28657
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.