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Q283U5

- Q283U5_BPPH6

UniProt

Q283U5 - Q283U5_BPPH6

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Protein
Submitted name: Membrane protein
Gene
p5a, P5a
Organism
Pseudomonas phage phi6 (Bacteriophage phi-6)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei111 – 1111N-acetyl-D-glucosamineImported
Binding sitei155 – 1551N-acetyl-D-glucosamineImported
Binding sitei178 – 1781N-acetyl-D-glucosamineImported
Binding sitei182 – 1821N-acetyl-D-glucosamine; via amide nitrogenImported

Names & Taxonomyi

Protein namesi
Submitted name:
Membrane proteinImported
Submitted name:
P5Imported
Submitted name:
P5aImported
Gene namesi
Name:p5aImported
Synonyms:P5aImported
OrganismiPseudomonas phage phi6 (Bacteriophage phi-6)Imported
Taxonomic identifieri10879 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesCystoviridaeCystovirus
Virus hostiPseudomonas syringae pv. phaseolicola [TaxID: 319]

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DQ5X-ray1.40A/B48-220[»]
4DQ7X-ray1.40A/B48-220[»]
4DQJX-ray1.23A/B48-220[»]

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni116 – 1249N-acetyl-D-glucosamine bindingImported

Family and domain databases

InterProiIPR019505. Peptidase_U40.
[Graphical view]
PfamiPF10464. Peptidase_U40. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q283U5-1 [UniParc]FASTAAdd to Basket

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MSKDSAFAVQ YSLRALGQKV RADGVVGSET RAALDALPEN QKKAIVELQA    50
LLPKAQSVGN SRVRFTTAEV DSAVARISQK IGVPASYYQF LIPIENFVVA 100
GGFETTVSGS FRGLGQFNRQ TWDGLRRLGR NLPAFEEGSA QLNASLYAIG 150
FLYLENKRAY EASFKGRVFT HEIAYLYHNQ GAPAAEQYLT SGRLVYPKQS 200
EAAVAAVAAA RNQHVKESWA 220
Length:220
Mass (Da):24,023
Last modified:April 4, 2006 - v1
Checksum:i8827BEF9380DC74F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ201338 Genomic RNA. Translation: ABB69811.1.
DQ785287 Genomic RNA. Translation: ABI20400.1.
DQ785288 Genomic RNA. Translation: ABI20404.1.
DQ978302 Genomic RNA. Translation: ABK35417.1.
DQ978303 Genomic RNA. Translation: ABK35421.1.
DQ978304 Genomic RNA. Translation: ABK35425.1.
DQ978305 Genomic RNA. Translation: ABK35429.1.
DQ978306 Genomic RNA. Translation: ABK35433.1.
DQ978307 Genomic RNA. Translation: ABK35437.1.
DQ978309 Genomic RNA. Translation: ABK35445.1.
JX481854 Genomic RNA. Translation: AFR52907.1.
JX481857 Genomic RNA. Translation: AFR52919.1.
JX481860 Genomic RNA. Translation: AFR52931.1.
JX481861 Genomic RNA. Translation: AFR52935.1.
JX481866 Genomic RNA. Translation: AFR52955.1.
JX481867 Genomic RNA. Translation: AFR52959.1.
JX481868 Genomic RNA. Translation: AFR52963.1.
JX481869 Genomic RNA. Translation: AFR52967.1.
JX481878 Genomic RNA. Translation: AFR53003.1.
JX481879 Genomic RNA. Translation: AFR53007.1.
JX481880 Genomic RNA. Translation: AFR53011.1.
JX481882 Genomic RNA. Translation: AFR53019.1.
JX481883 Genomic RNA. Translation: AFR53023.1.
JX481885 Genomic RNA. Translation: AFR53031.1.
KF615858 Genomic RNA. Translation: AGY35119.1.
KF615859 Genomic RNA. Translation: AGY35123.1.
KF615860 Genomic RNA. Translation: AGY35127.1.
KF615861 Genomic RNA. Translation: AGY35131.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ201338 Genomic RNA. Translation: ABB69811.1 .
DQ785287 Genomic RNA. Translation: ABI20400.1 .
DQ785288 Genomic RNA. Translation: ABI20404.1 .
DQ978302 Genomic RNA. Translation: ABK35417.1 .
DQ978303 Genomic RNA. Translation: ABK35421.1 .
DQ978304 Genomic RNA. Translation: ABK35425.1 .
DQ978305 Genomic RNA. Translation: ABK35429.1 .
DQ978306 Genomic RNA. Translation: ABK35433.1 .
DQ978307 Genomic RNA. Translation: ABK35437.1 .
DQ978309 Genomic RNA. Translation: ABK35445.1 .
JX481854 Genomic RNA. Translation: AFR52907.1 .
JX481857 Genomic RNA. Translation: AFR52919.1 .
JX481860 Genomic RNA. Translation: AFR52931.1 .
JX481861 Genomic RNA. Translation: AFR52935.1 .
JX481866 Genomic RNA. Translation: AFR52955.1 .
JX481867 Genomic RNA. Translation: AFR52959.1 .
JX481868 Genomic RNA. Translation: AFR52963.1 .
JX481869 Genomic RNA. Translation: AFR52967.1 .
JX481878 Genomic RNA. Translation: AFR53003.1 .
JX481879 Genomic RNA. Translation: AFR53007.1 .
JX481880 Genomic RNA. Translation: AFR53011.1 .
JX481882 Genomic RNA. Translation: AFR53019.1 .
JX481883 Genomic RNA. Translation: AFR53023.1 .
JX481885 Genomic RNA. Translation: AFR53031.1 .
KF615858 Genomic RNA. Translation: AGY35119.1 .
KF615859 Genomic RNA. Translation: AGY35123.1 .
KF615860 Genomic RNA. Translation: AGY35127.1 .
KF615861 Genomic RNA. Translation: AGY35131.1 .

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
4DQ5 X-ray 1.40 A/B 48-220 [» ]
4DQ7 X-ray 1.40 A/B 48-220 [» ]
4DQJ X-ray 1.23 A/B 48-220 [» ]
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

InterProi IPR019505. Peptidase_U40.
[Graphical view ]
Pfami PF10464. Peptidase_U40. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Pleiotropic costs of niche expansion in the RNA bacteriophage phi 6."
    Duffy S., Turner P.E., Burch C.L.
    Genetics 172:751-757(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 21781-B1Imported.
  2. "Greater genetic diversity among asexual, not sexual, populations of bacteriophage phi6."
    Dennehy J.J., O'Keefe K.J., Duffy S., Chao L., Edwards S.V., Turner P.E.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A1Imported and S1Imported.
  3. "Lack of canalization during adaptation of the dsRNA bacteriophage phi-6 to a distantly related host."
    Duffy S., Burch C.L., Turner P.E.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: T1Imported, T2Imported, T4Imported, Tom1Imported, Tom2Imported, Tom3Imported and Tom4Imported.
  4. "Evolutionary genomics of host-use in bifurcating demes of RNA virus phi-6."
    Turner P.E., McBride R.C., Duffy S., Montville R., Wang L.S., Yang Y.W., Lee S.J., Kim J.
    BMC Evol. Biol. 12:153-153(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  5. "Structural Evolution of an enzyme driven tradeoff between RNA virus survival and reproduction."
    Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
    Submitted (FEB-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS) OF 48-220.
  6. "Structural evolution of an enzyme driven tradeoff between RNA virus survival and reproduction."
    Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
    Submitted (FEB-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.23 ANGSTROMS) OF 48-220 IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE.
  7. "Structural evolution of an enzyme driven tradoff between RNA virus survival and reproduction."
    Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
    Submitted (FEB-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS) OF 48-220.
  8. "Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages."
    Diaz-Munoz S.L., Tenaillon O., Goldhill D., Brao K., Turner P.E., Chao L.
    BMC Evol. Biol. 13:206-206(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Fast1Imported, Fast2Imported, Slow1Imported and Slow2Imported.

Entry informationi

Entry nameiQ283U5_BPPH6
AccessioniPrimary (citable) accession number: Q283U5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: June 11, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3

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