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Protein
Submitted name:

Membrane protein

Gene

p5a

Organism
Pseudomonas phage phi6 (Bacteriophage phi-6)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei111 – 1111N-acetyl-D-glucosamineCombined sources
Binding sitei155 – 1551N-acetyl-D-glucosamineCombined sources
Binding sitei178 – 1781N-acetyl-D-glucosamineCombined sources
Binding sitei182 – 1821N-acetyl-D-glucosamine; via amide nitrogenCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
Membrane proteinImported
Submitted name:
P5Imported
Submitted name:
P5aImported
Gene namesi
Name:p5aImported
Synonyms:P5aImported
OrganismiPseudomonas phage phi6 (Bacteriophage phi-6)Imported
Taxonomic identifieri10879 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesCystoviridaeCystovirus
Virus hostiPseudomonas savastanoi pv. phaseolicola (Pseudomonas syringae pv. phaseolicola) [TaxID: 319]

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DQ5X-ray1.40A/B48-220[»]
4DQ7X-ray1.40A/B48-220[»]
4DQJX-ray1.23A/B48-220[»]
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni116 – 1249N-acetyl-D-glucosamine bindingCombined sources

Family and domain databases

InterProiIPR019505. Peptidase_U40.
[Graphical view]
PfamiPF10464. Peptidase_U40. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q283U5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKDSAFAVQ YSLRALGQKV RADGVVGSET RAALDALPEN QKKAIVELQA
60 70 80 90 100
LLPKAQSVGN SRVRFTTAEV DSAVARISQK IGVPASYYQF LIPIENFVVA
110 120 130 140 150
GGFETTVSGS FRGLGQFNRQ TWDGLRRLGR NLPAFEEGSA QLNASLYAIG
160 170 180 190 200
FLYLENKRAY EASFKGRVFT HEIAYLYHNQ GAPAAEQYLT SGRLVYPKQS
210 220
EAAVAAVAAA RNQHVKESWA
Length:220
Mass (Da):24,023
Last modified:April 4, 2006 - v1
Checksum:i8827BEF9380DC74F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ201338 Genomic RNA. Translation: ABB69811.1.
DQ785287 Genomic RNA. Translation: ABI20400.1.
DQ785288 Genomic RNA. Translation: ABI20404.1.
DQ978302 Genomic RNA. Translation: ABK35417.1.
DQ978303 Genomic RNA. Translation: ABK35421.1.
DQ978304 Genomic RNA. Translation: ABK35425.1.
DQ978305 Genomic RNA. Translation: ABK35429.1.
DQ978306 Genomic RNA. Translation: ABK35433.1.
DQ978307 Genomic RNA. Translation: ABK35437.1.
DQ978309 Genomic RNA. Translation: ABK35445.1.
JX481854 Genomic RNA. Translation: AFR52907.1.
JX481857 Genomic RNA. Translation: AFR52919.1.
JX481860 Genomic RNA. Translation: AFR52931.1.
JX481861 Genomic RNA. Translation: AFR52935.1.
JX481866 Genomic RNA. Translation: AFR52955.1.
JX481867 Genomic RNA. Translation: AFR52959.1.
JX481868 Genomic RNA. Translation: AFR52963.1.
JX481869 Genomic RNA. Translation: AFR52967.1.
JX481878 Genomic RNA. Translation: AFR53003.1.
JX481879 Genomic RNA. Translation: AFR53007.1.
JX481880 Genomic RNA. Translation: AFR53011.1.
JX481882 Genomic RNA. Translation: AFR53019.1.
JX481883 Genomic RNA. Translation: AFR53023.1.
JX481885 Genomic RNA. Translation: AFR53031.1.
KF615858 Genomic RNA. Translation: AGY35119.1.
KF615859 Genomic RNA. Translation: AGY35123.1.
KF615860 Genomic RNA. Translation: AGY35127.1.
KF615861 Genomic RNA. Translation: AGY35131.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ201338 Genomic RNA. Translation: ABB69811.1.
DQ785287 Genomic RNA. Translation: ABI20400.1.
DQ785288 Genomic RNA. Translation: ABI20404.1.
DQ978302 Genomic RNA. Translation: ABK35417.1.
DQ978303 Genomic RNA. Translation: ABK35421.1.
DQ978304 Genomic RNA. Translation: ABK35425.1.
DQ978305 Genomic RNA. Translation: ABK35429.1.
DQ978306 Genomic RNA. Translation: ABK35433.1.
DQ978307 Genomic RNA. Translation: ABK35437.1.
DQ978309 Genomic RNA. Translation: ABK35445.1.
JX481854 Genomic RNA. Translation: AFR52907.1.
JX481857 Genomic RNA. Translation: AFR52919.1.
JX481860 Genomic RNA. Translation: AFR52931.1.
JX481861 Genomic RNA. Translation: AFR52935.1.
JX481866 Genomic RNA. Translation: AFR52955.1.
JX481867 Genomic RNA. Translation: AFR52959.1.
JX481868 Genomic RNA. Translation: AFR52963.1.
JX481869 Genomic RNA. Translation: AFR52967.1.
JX481878 Genomic RNA. Translation: AFR53003.1.
JX481879 Genomic RNA. Translation: AFR53007.1.
JX481880 Genomic RNA. Translation: AFR53011.1.
JX481882 Genomic RNA. Translation: AFR53019.1.
JX481883 Genomic RNA. Translation: AFR53023.1.
JX481885 Genomic RNA. Translation: AFR53031.1.
KF615858 Genomic RNA. Translation: AGY35119.1.
KF615859 Genomic RNA. Translation: AGY35123.1.
KF615860 Genomic RNA. Translation: AGY35127.1.
KF615861 Genomic RNA. Translation: AGY35131.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
4DQ5X-ray1.40A/B48-220[»]
4DQ7X-ray1.40A/B48-220[»]
4DQJX-ray1.23A/B48-220[»]
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR019505. Peptidase_U40.
[Graphical view]
PfamiPF10464. Peptidase_U40. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Pleiotropic costs of niche expansion in the RNA bacteriophage phi 6."
    Duffy S., Turner P.E., Burch C.L.
    Genetics 172:751-757(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC 21781-B1Imported.
  2. "Greater genetic diversity among asexual, not sexual, populations of bacteriophage phi6."
    Dennehy J.J., O'Keefe K.J., Duffy S., Chao L., Edwards S.V., Turner P.E.
    Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A1Imported and S1Imported.
  3. "Lack of canalization during adaptation of the dsRNA bacteriophage phi-6 to a distantly related host."
    Duffy S., Burch C.L., Turner P.E.
    Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: T1Imported, T2Imported, T4Imported, Tom1Imported, Tom2Imported, Tom3Imported and Tom4Imported.
  4. "Evolutionary genomics of host-use in bifurcating demes of RNA virus phi-6."
    Turner P.E., McBride R.C., Duffy S., Montville R., Wang L.S., Yang Y.W., Lee S.J., Kim J.
    BMC Evol. Biol. 12:153-153(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  5. "Structural Evolution of an enzyme driven tradeoff between RNA virus survival and reproduction."
    Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
    Submitted (FEB-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS) OF 48-220.
  6. "Structural evolution of an enzyme driven tradeoff between RNA virus survival and reproduction."
    Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
    Submitted (FEB-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.23 ANGSTROMS) OF 48-220 IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE.
  7. "Structural evolution of an enzyme driven tradoff between RNA virus survival and reproduction."
    Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
    Submitted (FEB-2012) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS) OF 48-220.
  8. "Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages."
    Diaz-Munoz S.L., Tenaillon O., Goldhill D., Brao K., Turner P.E., Chao L.
    BMC Evol. Biol. 13:206-206(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Fast1Imported, Fast2Imported, Slow1Imported and Slow2Imported.

Entry informationi

Entry nameiQ283U5_BPPH6
AccessioniPrimary (citable) accession number: Q283U5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: June 24, 2015
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.