Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

Q283U5 (Q283U5_BPPH6) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

P5 EMBL AGY35119.1

P5a EMBL ABB69811.1
Gene names
Name:p5a EMBL ABB69811.1
Synonyms:P5a EMBL ABK35417.1
OrganismPseudomonas phage phi6 (Bacteriophage phi-6) EMBL ABB69811.1
Taxonomic identifier10879 [NCBI]
Taxonomic lineageVirusesdsRNA virusesCystoviridaeCystovirus
Virus hostPseudomonas syringae pv. phaseolicola [TaxID: 319]

Protein attributes

Sequence length220 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 4DQ7 PDB 4DQ5 PDB 4DQJ
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region116 – 1249N-acetyl-D-glucosamine binding PDB 4DQJ

Sites

Binding site1111N-acetyl-D-glucosamine PDB 4DQJ
Binding site1551N-acetyl-D-glucosamine PDB 4DQJ
Binding site1781N-acetyl-D-glucosamine PDB 4DQJ
Binding site1821N-acetyl-D-glucosamine; via amide nitrogen PDB 4DQJ

Sequences

Sequence LengthMass (Da)Tools
Q283U5 [UniParc].

Last modified April 4, 2006. Version 1.
Checksum: 8827BEF9380DC74F

FASTA22024,023
        10         20         30         40         50         60 
MSKDSAFAVQ YSLRALGQKV RADGVVGSET RAALDALPEN QKKAIVELQA LLPKAQSVGN 

        70         80         90        100        110        120 
SRVRFTTAEV DSAVARISQK IGVPASYYQF LIPIENFVVA GGFETTVSGS FRGLGQFNRQ 

       130        140        150        160        170        180 
TWDGLRRLGR NLPAFEEGSA QLNASLYAIG FLYLENKRAY EASFKGRVFT HEIAYLYHNQ 

       190        200        210        220 
GAPAAEQYLT SGRLVYPKQS EAAVAAVAAA RNQHVKESWA 

« Hide

References

[1]"Pleiotropic costs of niche expansion in the RNA bacteriophage phi 6."
Duffy S., Turner P.E., Burch C.L.
Genetics 172:751-757(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ATCC 21781-B1 EMBL ABB69811.1.
[2]"Greater genetic diversity among asexual, not sexual, populations of bacteriophage phi6."
Dennehy J.J., O'Keefe K.J., Duffy S., Chao L., Edwards S.V., Turner P.E.
Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: A1 EMBL ABI20400.1 and S1 EMBL ABI20404.1.
[3]"Lack of canalization during adaptation of the dsRNA bacteriophage phi-6 to a distantly related host."
Duffy S., Burch C.L., Turner P.E.
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: T1 EMBL ABK35433.1, T2 EMBL ABK35437.1, T4 EMBL ABK35445.1, Tom1 EMBL ABK35417.1, Tom2 EMBL ABK35421.1, Tom3 EMBL ABK35425.1 and Tom4 EMBL ABK35429.1.
[4]"Evolutionary genomics of host-use in bifurcating demes of RNA virus phi-6."
Turner P.E., McBride R.C., Duffy S., Montville R., Wang L.S., Yang Y.W., Lee S.J., Kim J.
BMC Evol. Biol. 12:153-153(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]"Structural evolution of an enzyme driven tradeoff between RNA virus survival and reproduction."
Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
Submitted (FEB-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.23 ANGSTROMS) OF 48-220 IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE.
[6]"Structural Evolution of an enzyme driven tradeoff between RNA virus survival and reproduction."
Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
Submitted (FEB-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS) OF 48-220.
[7]"Structural evolution of an enzyme driven tradoff between RNA virus survival and reproduction."
Dessau M.A., Goldhill D., McBride R.L., Turner P.E., Modis Y.
Submitted (FEB-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS) OF 48-220.
[8]"Electrophoretic mobility confirms reassortment bias among geographic isolates of segmented RNA phages."
Diaz-Munoz S.L., Tenaillon O., Goldhill D., Brao K., Turner P.E., Chao L.
BMC Evol. Biol. 13:206-206(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Fast1 EMBL AGY35119.1, Fast2 EMBL AGY35123.1, Slow1 EMBL AGY35127.1 and Slow2 EMBL AGY35131.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DQ201338 Genomic RNA. Translation: ABB69811.1.
DQ785287 Genomic RNA. Translation: ABI20400.1.
DQ785288 Genomic RNA. Translation: ABI20404.1.
DQ978302 Genomic RNA. Translation: ABK35417.1.
DQ978303 Genomic RNA. Translation: ABK35421.1.
DQ978304 Genomic RNA. Translation: ABK35425.1.
DQ978305 Genomic RNA. Translation: ABK35429.1.
DQ978306 Genomic RNA. Translation: ABK35433.1.
DQ978307 Genomic RNA. Translation: ABK35437.1.
DQ978309 Genomic RNA. Translation: ABK35445.1.
JX481854 Genomic RNA. Translation: AFR52907.1.
JX481857 Genomic RNA. Translation: AFR52919.1.
JX481860 Genomic RNA. Translation: AFR52931.1.
JX481861 Genomic RNA. Translation: AFR52935.1.
JX481866 Genomic RNA. Translation: AFR52955.1.
JX481867 Genomic RNA. Translation: AFR52959.1.
JX481868 Genomic RNA. Translation: AFR52963.1.
JX481869 Genomic RNA. Translation: AFR52967.1.
JX481878 Genomic RNA. Translation: AFR53003.1.
JX481879 Genomic RNA. Translation: AFR53007.1.
JX481880 Genomic RNA. Translation: AFR53011.1.
JX481882 Genomic RNA. Translation: AFR53019.1.
JX481883 Genomic RNA. Translation: AFR53023.1.
JX481885 Genomic RNA. Translation: AFR53031.1.
KF615858 Genomic RNA. Translation: AGY35119.1.
KF615859 Genomic RNA. Translation: AGY35123.1.
KF615860 Genomic RNA. Translation: AGY35127.1.
KF615861 Genomic RNA. Translation: AGY35131.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4DQ5X-ray1.40A/B48-220[»]
4DQ7X-ray1.40A/B48-220[»]
4DQJX-ray1.23A/B48-220[»]
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR019505. Peptidase_U40.
[Graphical view]
PfamPF10464. Peptidase_U40. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ283U5_BPPH6
AccessionPrimary (citable) accession number: Q283U5
Entry history
Integrated into UniProtKB/TrEMBL: April 4, 2006
Last sequence update: April 4, 2006
Last modified: April 16, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)