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Q28034

- GLU2B_BOVIN

UniProt

Q28034 - GLU2B_BOVIN

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Protein

Glucosidase 2 subunit beta

Gene
PRKCSH
Organism
Bos taurus (Bovine)
Status
Reviewed - Annotation score: 4 out of 5 - Experimental evidence at transcript leveli

Functioni

Regulatory subunit of glucosidase II.1 Publication

Pathwayi

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Calcium bindingi212 – 235241 Reviewed predictionAdd
BLAST

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. hydrolase activity Source: UniProtKB-KW
  3. RNA binding Source: Ensembl

GO - Biological processi

  1. in utero embryonic development Source: Ensembl
  2. liver development Source: Ensembl
  3. negative regulation of neuron projection development Source: Ensembl
  4. N-glycan processing Source: InterPro
  5. nitrogen compound metabolic process Source: Ensembl
  6. renal system development Source: Ensembl
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

Calcium, Metal-binding

Enzyme and pathway databases

ReactomeiREACT_204725. Advanced glycosylation endproduct receptor signaling.
REACT_208919. N-glycan trimming in the ER and Calnexin/Calreticulin cycle.
REACT_215263. Calnexin/calreticulin cycle.
UniPathwayiUPA00957.

Names & Taxonomyi

Protein namesi
Recommended name:
Glucosidase 2 subunit beta
Alternative name(s):
80K-H protein
Glucosidase II subunit beta
Protein kinase C substrate 60.1 kDa protein heavy chain
Short name:
PKCSH
Vacuolar system-associated protein 60
Short name:
VASAP-60
Gene namesi
Name:PRKCSH
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
ProteomesiUP000009136: Chromosome 7

Subcellular locationi

Endoplasmic reticulum By similarity

GO - Cellular componenti

  1. endoplasmic reticulum Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1313 By similarityAdd
BLAST
Chaini14 – 533520Glucosidase 2 subunit betaPRO_0000004142Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi71 – 711N-linked (GlcNAc...) Reviewed prediction
Modified residuei88 – 881Phosphoserine; by PKC Reviewed prediction
Modified residuei165 – 1651N6-succinyllysine By similarity
Modified residuei388 – 3881Phosphoserine; by PKC Reviewed prediction
Modified residuei395 – 3951Phosphoserine; by PKC Reviewed prediction
Modified residuei439 – 4391Phosphoserine; by PKC Reviewed prediction
Glycosylationi481 – 4811N-linked (GlcNAc...) Reviewed prediction

Keywords - PTMi

Glycoprotein, Phosphoprotein

Proteomic databases

PaxDbiQ28034.
PRIDEiQ28034.

Expressioni

Tissue specificityi

Ubiquitous. Highly expressed in liver, spleen, lung, duodenum, stomach, adrenal gland, pituitary, testis, corpus luteum, uterus and fetal ovary.1 Publication

Interactioni

Subunit structurei

Heterodimer of a catalytic alpha subunit (GANAB) and a beta subunit (PRKCSH). Binds glycosylated PTPRC By similarity.

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000010787.

Structurei

3D structure databases

ProteinModelPortaliQ28034.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini208 – 24336EF-hand 1Add
BLAST
Domaini244 – 27936EF-hand 2Add
BLAST
Domaini418 – 47356PRKCSHAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi530 – 5334Prevents secretion from ER Reviewed prediction

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi299 – 402104Asp/Glu-rich (acidic)Add
BLAST

Sequence similaritiesi

Contains 2 EF-hand domains.
Contains 1 PRKCSH domain.

Keywords - Domaini

Repeat, Signal

Phylogenomic databases

eggNOGiNOG289998.
GeneTreeiENSGT00510000047770.
HOGENOMiHOG000007805.
HOVERGENiHBG051738.
InParanoidiQ28034.
KOiK08288.
OMAiGQHCWNG.
OrthoDBiEOG7DZ8JX.
TreeFamiTF329550.

Family and domain databases

Gene3Di2.70.130.10. 1 hit.
4.10.400.10. 2 hits.
InterProiIPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
IPR026874. Glucosidase_2_bsu.
IPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view]
PANTHERiPTHR12630:SF1. PTHR12630:SF1. 1 hit.
PfamiPF13202. EF-hand_5. 1 hit.
PF12999. PRKCSH-like. 1 hit.
[Graphical view]
SMARTiSM00192. LDLa. 2 hits.
[Graphical view]
SUPFAMiSSF50911. SSF50911. 1 hit.
SSF57424. SSF57424. 1 hit.
PROSITEiPS00018. EF_HAND_1. 1 hit.
PS50222. EF_HAND_2. 1 hit.
PS00014. ER_TARGET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q28034-1 [UniParc]FASTAAdd to Basket

« Hide

MLLLLLLLPM CWAVEVRRPR GVSLTNHHFY DESKPFTCLD GSASIPFDQV    50
NDDYCDCKDG SDEPGTAACP NGSFHCTNTG YKALYISSRW VNDGVCDCCD 100
GTDEYNSGIV CENTCKEKGR KERETLQQMA EVTREGFRLK KILIEDWKKA 150
REEKQKKLIE LQAGKKSLED QVEVLRTLKE EAEKPEEAAK DQHRRLWEEQ 200
QAISKEQRER ELAASAFQEL DDDMDGAVSV AELQTHPELD TDGDGALSEG 250
EAQTLLGGDA QMDAAFFYDR VWAAIRDKYR SEVLPTEYPP SPPAPDVMEP 300
KEEQPPMPSP PTEEEDEDEE DEETEEDEDE EDEDSQGEQP KDAPPPAPAP 350
QTASPTEEDR MPPYDEQTQA FINAAQEARN KFEEAERSLK DMEESIRNLE 400
QEISFDFGPN GEFAYLYSQC YELTTNEYVY RLCPFKLVSQ KPKLGGSPTS 450
LGTWGSWAGP DHDKFSAMKY EQGTGCWQGP NRSTTVRLLC GKETVVTSTT 500
EPSRCEYLME LMTPAACPEP PPEYPVEGDH DEL 533
Length:533
Mass (Da):60,151
Last modified:November 1, 1997 - v1
Checksum:i50785B677FB81E01
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U49178 mRNA. Translation: AAA92060.1.
AF299077 Genomic DNA. Translation: AAQ14482.1.
BT030688 mRNA. Translation: ABS45004.1.
BC104524 mRNA. Translation: AAI04525.1.
RefSeqiNP_788835.1. NM_176662.1.
XP_005208774.1. XM_005208717.1.
UniGeneiBt.6139.

Genome annotation databases

EnsembliENSBTAT00000010787; ENSBTAP00000010787; ENSBTAG00000008202.
GeneIDi338067.
KEGGibta:338067.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U49178 mRNA. Translation: AAA92060.1 .
AF299077 Genomic DNA. Translation: AAQ14482.1 .
BT030688 mRNA. Translation: ABS45004.1 .
BC104524 mRNA. Translation: AAI04525.1 .
RefSeqi NP_788835.1. NM_176662.1.
XP_005208774.1. XM_005208717.1.
UniGenei Bt.6139.

3D structure databases

ProteinModelPortali Q28034.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9913.ENSBTAP00000010787.

Proteomic databases

PaxDbi Q28034.
PRIDEi Q28034.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSBTAT00000010787 ; ENSBTAP00000010787 ; ENSBTAG00000008202 .
GeneIDi 338067.
KEGGi bta:338067.

Organism-specific databases

CTDi 5589.

Phylogenomic databases

eggNOGi NOG289998.
GeneTreei ENSGT00510000047770.
HOGENOMi HOG000007805.
HOVERGENi HBG051738.
InParanoidi Q28034.
KOi K08288.
OMAi GQHCWNG.
OrthoDBi EOG7DZ8JX.
TreeFami TF329550.

Enzyme and pathway databases

UniPathwayi UPA00957 .
Reactomei REACT_204725. Advanced glycosylation endproduct receptor signaling.
REACT_208919. N-glycan trimming in the ER and Calnexin/Calreticulin cycle.
REACT_215263. Calnexin/calreticulin cycle.

Miscellaneous databases

NextBioi 20812518.

Family and domain databases

Gene3Di 2.70.130.10. 1 hit.
4.10.400.10. 2 hits.
InterProi IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
IPR026874. Glucosidase_2_bsu.
IPR002172. LDrepeatLR_classA_rpt.
IPR009011. Man6P_isomerase_rcpt-bd_dom.
IPR028146. PRKCSH_N.
[Graphical view ]
PANTHERi PTHR12630:SF1. PTHR12630:SF1. 1 hit.
Pfami PF13202. EF-hand_5. 1 hit.
PF12999. PRKCSH-like. 1 hit.
[Graphical view ]
SMARTi SM00192. LDLa. 2 hits.
[Graphical view ]
SUPFAMi SSF50911. SSF50911. 1 hit.
SSF57424. SSF57424. 1 hit.
PROSITEi PS00018. EF_HAND_1. 1 hit.
PS50222. EF_HAND_2. 1 hit.
PS00014. ER_TARGET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Vacuolar system-associated protein-60: a protein characterized from bovine granulosa and luteal cells that is associated with intracellular vesicles and related to human 80K-H and murine beta-glucosidase II."
    Brule S., Rabahi F., Faure R., Beckers J.-F.M.P., Silversides D.W., Lussier J.G.
    Biol. Reprod. 62:642-654(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY.
    Strain: Holstein.
    Tissue: Corpus luteum.
  2. "Bos taurus vacuolar system asociated protein-60 (VASAP-60) promotor and complete gene sequences."
    Brule S., Silversides D., Lussier J.G.
    Submitted (AUG-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  4. NIH - Mammalian Gene Collection (MGC) project
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Hereford.
    Tissue: Ascending colon.

Entry informationi

Entry nameiGLU2B_BOVIN
AccessioniPrimary (citable) accession number: Q28034
Secondary accession number(s): A7E3R7, Q3SX37
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: September 3, 2014
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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