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Q27302 (GLBH_CAEBR) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Globin-like protein
Gene names
Name:glb-1
Synonyms:cbg-1, glo
ORF Names:CBG06867
OrganismCaenorhabditis briggsae [Reference proteome]
Taxonomic identifier6238 [NCBI]
Taxonomic lineageEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis

Protein attributes

Sequence length160 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

May be a globin and may play a role in oxygen transport By similarity.

Subcellular location

Cytoplasm Potential.

Sequence similarities

Belongs to the globin family.

Caution

It is uncertain whether Met-1 or Met-3 is the initiator.

Ontologies

Keywords
   Biological processOxygen transport
Transport
   Cellular componentCytoplasm
   LigandHeme
Iron
Metal-binding
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionheme binding

Inferred from electronic annotation. Source: InterPro

iron ion binding

Inferred from electronic annotation. Source: InterPro

oxygen binding

Inferred from electronic annotation. Source: InterPro

oxygen transporter activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 160160Globin-like protein
PRO_0000052462

Sites

Metal binding1011Iron (heme proximal ligand) By similarity

Sequences

Sequence LengthMass (Da)Tools
Q27302 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: AA301137614D2FA0

FASTA16018,591
        10         20         30         40         50         60 
MSMTRQEIQD LCVKSLEEKM VGTTDKGIAN GNGFYQYFFT NFPDLRVYFK GAEKFTAEDV 

        70         80         90        100        110        120 
KKSERFDKQG QRILLACHLI ANVFTNEEVF KAYVRETINR HRIYKMDPAL WMAFFTVFTG 

       130        140        150        160 
YLESTGSLND QQKAAWMALG KEFNAECQVH LKNSNLPYVH 

« Hide

References

« Hide 'large scale' references
[1]Kloek A.P., Goldberg D.E.
Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
[2]"The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics."
Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N., Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P., Fitch D.H.A., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W., Hillier L.W. expand/collapse author list , Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A., Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E., Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K., Durbin R.M., Waterston R.H.
PLoS Biol. 1:166-192(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: AF16.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U48291, U48290 Genomic DNA. Translation: AAA89169.1.
U48289 mRNA. Translation: AAA89168.1.
HE601347 Genomic DNA. Translation: CAP27100.1.
RefSeqXP_002642457.1. XM_002642411.1.

3D structure databases

ProteinModelPortalQ27302.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING6238.CBG06867.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaCBG06867; CBG06867; CBG06867.
GeneID8584451.
KEGGcbr:CBG06867.

Organism-specific databases

CTD8584451.
WormBaseCBG06867; CBP07494; WBGene00000312; Cbr-glb-1.

Phylogenomic databases

eggNOGNOG237047.
HOGENOMHOG000112731.
OMADPALWMA.
OrthoDBEOG7RNK4G.

Family and domain databases

Gene3D1.10.490.10. 1 hit.
InterProIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin_dom.
IPR012085. Globin_nematode.
[Graphical view]
PfamPF00042. Globin. 1 hit.
[Graphical view]
PIRSFPIRSF002026. Nematode_globin. 1 hit.
SUPFAMSSF46458. SSF46458. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLBH_CAEBR
AccessionPrimary (citable) accession number: Q27302
Secondary accession number(s): A8X390
Entry history
Integrated into UniProtKB/Swiss-Prot: September 27, 2005
Last sequence update: November 1, 1996
Last modified: May 14, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Relevant documents

SIMILARITY comments

Index of protein domains and families