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Protein

Globin-like protein

Gene

glb-1

Organism
Caenorhabditis briggsae
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

May be a globin and may play a role in oxygen transport.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi101 – 1011Iron (heme proximal ligand)By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Oxygen transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Globin-like protein
Gene namesi
Name:glb-1
Synonyms:cbg-1, glo
ORF Names:CBG06867
OrganismiCaenorhabditis briggsae
Taxonomic identifieri6238 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000008549 Componentsi: Chromosome III, Unassembled WGS sequence

Organism-specific databases

WormBaseiCBG06867; CBP07494; WBGene00000312; Cbr-glb-1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 160160Globin-like proteinPRO_0000052462Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi6238.CBG06867.

Structurei

3D structure databases

ProteinModelPortaliQ27302.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the globin family.Curated

Phylogenomic databases

eggNOGiNOG237047.
HOGENOMiHOG000112731.
InParanoidiQ27302.
OMAiDPALWMA.
OrthoDBiEOG7RNK4G.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin_dom.
IPR012085. Globin_nematode.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
PIRSFiPIRSF002026. Nematode_globin. 1 hit.
SUPFAMiSSF46458. SSF46458. 1 hit.

Sequencei

Sequence statusi: Complete.

Q27302-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSMTRQEIQD LCVKSLEEKM VGTTDKGIAN GNGFYQYFFT NFPDLRVYFK
60 70 80 90 100
GAEKFTAEDV KKSERFDKQG QRILLACHLI ANVFTNEEVF KAYVRETINR
110 120 130 140 150
HRIYKMDPAL WMAFFTVFTG YLESTGSLND QQKAAWMALG KEFNAECQVH
160
LKNSNLPYVH
Length:160
Mass (Da):18,591
Last modified:November 1, 1996 - v1
Checksum:iAA301137614D2FA0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U48291, U48290 Genomic DNA. Translation: AAA89169.1.
U48289 mRNA. Translation: AAA89168.1.
HE601347 Genomic DNA. Translation: CAP27100.1.
RefSeqiXP_002642457.1. XM_002642411.1.

Genome annotation databases

EnsemblMetazoaiCBG06867; CBG06867; CBG06867.
GeneIDi8584451.
KEGGicbr:CBG06867.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U48291, U48290 Genomic DNA. Translation: AAA89169.1.
U48289 mRNA. Translation: AAA89168.1.
HE601347 Genomic DNA. Translation: CAP27100.1.
RefSeqiXP_002642457.1. XM_002642411.1.

3D structure databases

ProteinModelPortaliQ27302.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6238.CBG06867.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiCBG06867; CBG06867; CBG06867.
GeneIDi8584451.
KEGGicbr:CBG06867.

Organism-specific databases

CTDi8584451.
WormBaseiCBG06867; CBP07494; WBGene00000312; Cbr-glb-1.

Phylogenomic databases

eggNOGiNOG237047.
HOGENOMiHOG000112731.
InParanoidiQ27302.
OMAiDPALWMA.
OrthoDBiEOG7RNK4G.

Family and domain databases

Gene3Di1.10.490.10. 1 hit.
InterProiIPR000971. Globin.
IPR009050. Globin-like.
IPR012292. Globin_dom.
IPR012085. Globin_nematode.
[Graphical view]
PfamiPF00042. Globin. 1 hit.
[Graphical view]
PIRSFiPIRSF002026. Nematode_globin. 1 hit.
SUPFAMiSSF46458. SSF46458. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Kloek A.P., Goldberg D.E.
    Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: AF16.

Entry informationi

Entry nameiGLBH_CAEBR
AccessioniPrimary (citable) accession number: Q27302
Secondary accession number(s): A8X390
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 27, 2005
Last sequence update: November 1, 1996
Last modified: January 7, 2015
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Caution

It is uncertain whether Met-1 or Met-3 is the initiator.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.