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Protein
Submitted name:

Y box binding protein, putative

Gene

Smp_097800.1

Organism
Schistosoma mansoni (Blood fluke)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Y box binding protein, putativeImported
Submitted name:
Y-box binding proteinImported
Submitted name:
Y-box binding protein homologImported
Gene namesi
ORF Names:Smp_097800.1Imported
OrganismiSchistosoma mansoni (Blood fluke)Imported
Taxonomic identifieri6183 [NCBI]
Taxonomic lineageiEukaryotaMetazoaPlatyhelminthesTrematodaDigeneaStrigeididaSchistosomatoideaSchistosomatidaeSchistosoma
Proteomesi
  • UP000008854 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi6183.Smp_097800.3__mRNA.

Structurei

3D structure databases

ProteinModelPortaliQ27277.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini27 – 95CSPInterPro annotationAdd BLAST69

Sequence similaritiesi

Contains 1 CSD (cold-shock) domain.UniRule annotation

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
PhylomeDBiQ27277.

Family and domain databases

CDDicd04458. CSP_CDS. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q27277-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADTRPAEKD EQQKQNAPRK VMEERVKGVV KWFNVKAGYG FINRQDTSTD
60 70 80 90 100
IFVHQSAISR NNPEKLQRSL QEGEEVEFYV VEGDKGDEAS EVTGPGGEPV
110 120 130 140 150
KGSVYAALRG RGRSPRVFNM RGRGRGMGPG GFSSNQDFVP YYGPRGRGRG
160 170 180 190 200
RGGSEMYGGA YEFMDRGGRG RGFRGRGRPR GRGFRGSGGF ESRGRGGPRG
210
GRDNYHNGDG SPDMRDA
Length:217
Mass (Da):23,805
Last modified:November 1, 1996 - v1
Checksum:iD9CD3C753548FDA2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U39883 mRNA. Translation: AAC47760.1.
U42205 Genomic DNA. Translation: AAC47761.1.
CABG01000039 Genomic DNA. Translation: CCD59565.1.

Genome annotation databases

EnsemblMetazoaiSmp_097800.1; Smp_097800.1:pep; Smp_097800.
GeneDBiSmp_097800.1:pep.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U39883 mRNA. Translation: AAC47760.1.
U42205 Genomic DNA. Translation: AAC47761.1.
CABG01000039 Genomic DNA. Translation: CCD59565.1.

3D structure databases

ProteinModelPortaliQ27277.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6183.Smp_097800.3__mRNA.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiSmp_097800.1; Smp_097800.1:pep; Smp_097800.
GeneDBiSmp_097800.1:pep.

Phylogenomic databases

eggNOGiKOG3070. Eukaryota.
COG1278. LUCA.
PhylomeDBiQ27277.

Family and domain databases

CDDicd04458. CSP_CDS. 1 hit.
InterProiIPR019844. Cold-shock_CS.
IPR011129. Cold_shock_prot.
IPR002059. CSP_DNA-bd.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00313. CSD. 1 hit.
[Graphical view]
PRINTSiPR00050. COLDSHOCK.
SMARTiSM00357. CSP. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00352. COLD_SHOCK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ27277_SCHMA
AccessioniPrimary (citable) accession number: Q27277
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.