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Protein
Submitted name:

GH26440p

Gene

Rbp9

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  • mRNA 3'-UTR binding Source: FlyBase
  • mRNA binding Source: FlyBase
  • nucleotide binding Source: InterPro

GO - Biological processi

  • establishment of blood-brain barrier Source: FlyBase
  • germarium-derived egg chamber formation Source: FlyBase
  • germ cell proliferation Source: FlyBase
  • oogenesis Source: FlyBase
Complete GO annotation...

Keywords - Ligandi

RNA-bindingSAAS annotation

Enzyme and pathway databases

ReactomeiR-DME-450520. HuR (ELAVL1) binds and stabilizes mRNA.
R-DME-72163. mRNA Splicing - Major Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
GH26440pImported
Submitted name:
RNA-binding proteinImported
Submitted name:
RNA-binding protein 9, isoform EImported
Submitted name:
RNA-binding protein 9, isoform FImported
Submitted name:
RNA-binding protein 9, isoform GImported
Submitted name:
RNA-binding protein 9, isoform HImported
Gene namesi
Name:Rbp9Imported
Synonyms:RBP9Imported
ORF Names:CG3151Imported, Dmel_CG3151Imported
OrganismiDrosophila melanogaster (Fruit fly)Imported
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 2L

Organism-specific databases

FlyBaseiFBgn0010263. Rbp9.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: FlyBase
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiFBgn0010263.

Interactioni

Protein-protein interaction databases

STRINGi7227.FBpp0303246.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini110 – 188RRM (RNA recognition motif)InterPro annotationAdd BLAST79
Domaini196 – 276RRM (RNA recognition motif)InterPro annotationAdd BLAST81
Domaini356 – 434RRM (RNA recognition motif)InterPro annotationAdd BLAST79

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000114767.
KOiK13208.
OrthoDBiEOG091G0G9L.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
PRINTSiPR00961. HUDSXLRNA.
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q24474-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVEGQTAVQQ QQQQPSGAGG ASGVGSTTGS AGGPATANNV TNSQAQTNGG
60 70 80 90 100
TTATTTAAAG AGSTTNAAVG QATANNAASN NNNNNNNTNN NNNNNATANN
110 120 130 140 150
NNNNEPDPKT NLIVNYLPQT MSQDEIRSLF VSFGEVESCK LIRDKVTGQS
160 170 180 190 200
LGYGFVNYVK QEDAEKAINA LNGLRLQNKT IKVSIARPSS ESIKGANLYV
210 220 230 240 250
SGLPKNMTQS DLESLFSPYG KIITSRILCD NITGLSKGVG FIRFDQRFEA
260 270 280 290 300
DRAIKELNGT TPKNSTEPIT VKFANNPSSN KNSMQPLAAY IAPQNTRGGR
310 320 330 340 350
AFPANAAAGA AAAAAAAAIH PNAGRYSSVI SRYSPLTSDL ITNGMIQGNT
360 370 380 390 400
IASSGWCIFV YNLAPDTEEN VLWQLFGPFG AVQSVKVIRD LQSNKCKGFG
410 420 430
FVTMTNYEEA VLAIQSLNGY TLGNRVLQVS FKTNKNKQT
Length:439
Mass (Da):46,245
Last modified:November 1, 1996 - v1
Checksum:i47FF65ACFFD950D1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L04930 Genomic DNA. Translation: AAC13646.1.
AE014134 Genomic DNA. Translation: AAN10401.3.
AE014134 Genomic DNA. Translation: AAN10402.1.
AE014134 Genomic DNA. Translation: AAN10403.1.
BT011197 mRNA. Translation: AAR88559.1.
AE014134 Genomic DNA. Translation: AAX52651.1.
RefSeqiNP_001014462.1. NM_001014462.3.
NP_476936.3. NM_057588.3.
NP_599125.1. NM_134298.5.
NP_599126.1. NM_134299.5.
UniGeneiDm.4071.

Genome annotation databases

EnsemblMetazoaiFBtr0077638; FBpp0077323; FBgn0010263.
FBtr0077640; FBpp0077325; FBgn0010263.
FBtr0100468; FBpp0099898; FBgn0010263.
FBtr0290237; FBpp0288676; FBgn0010263.
GeneIDi33498.
KEGGidme:Dmel_CG3151.
UCSCiCG3151-RE. d. melanogaster.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L04930 Genomic DNA. Translation: AAC13646.1.
AE014134 Genomic DNA. Translation: AAN10401.3.
AE014134 Genomic DNA. Translation: AAN10402.1.
AE014134 Genomic DNA. Translation: AAN10403.1.
BT011197 mRNA. Translation: AAR88559.1.
AE014134 Genomic DNA. Translation: AAX52651.1.
RefSeqiNP_001014462.1. NM_001014462.3.
NP_476936.3. NM_057588.3.
NP_599125.1. NM_134298.5.
NP_599126.1. NM_134299.5.
UniGeneiDm.4071.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7227.FBpp0303246.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0077638; FBpp0077323; FBgn0010263.
FBtr0077640; FBpp0077325; FBgn0010263.
FBtr0100468; FBpp0099898; FBgn0010263.
FBtr0290237; FBpp0288676; FBgn0010263.
GeneIDi33498.
KEGGidme:Dmel_CG3151.
UCSCiCG3151-RE. d. melanogaster.

Organism-specific databases

CTDi33498.
FlyBaseiFBgn0010263. Rbp9.

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000114767.
KOiK13208.
OrthoDBiEOG091G0G9L.

Enzyme and pathway databases

ReactomeiR-DME-450520. HuR (ELAVL1) binds and stabilizes mRNA.
R-DME-72163. mRNA Splicing - Major Pathway.

Miscellaneous databases

GenomeRNAii33498.

Gene expression databases

BgeeiFBgn0010263.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
PRINTSiPR00961. HUDSXLRNA.
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ24474_DROME
AccessioniPrimary (citable) accession number: Q24474
Secondary accession number(s): Q7KU26
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 143 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.