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Protein
Submitted name:

Tartan protein

Gene

trn

Organism
Drosophila melanogaster (Fruit fly)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • branch fusion, open tracheal system Source: FlyBase
  • cell adhesion Source: FlyBase
  • cell migration Source: FlyBase
  • imaginal disc-derived wing morphogenesis Source: FlyBase
  • larval salivary gland morphogenesis Source: FlyBase
  • motor neuron axon guidance Source: FlyBase
  • open tracheal system development Source: FlyBase
  • sensory perception of pain Source: FlyBase
Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-DME-193634. Axonal growth inhibition (RHOA activation).

Names & Taxonomyi

Protein namesi
Submitted name:
Tartan proteinImported
Gene namesi
Name:trnImported
ORF Names:CG11280Imported
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraEndopterygotaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora

Organism-specific databases

FlyBaseiFBgn0010452. trn.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei438 – 45922HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222Sequence analysisAdd
BLAST
Chaini23 – 733711Sequence analysisPRO_5004202475Add
BLAST

Proteomic databases

PaxDbiQ24250.
PRIDEiQ24250.

Expressioni

Gene expression databases

BgeeiQ24250.
ExpressionAtlasiQ24250. differential.

Interactioni

Protein-protein interaction databases

STRINGi7227.FBpp0303108.

Structurei

3D structure databases

ProteinModelPortaliQ24250.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini378 – 43053LRRCTInterPro annotationAdd
BLAST

Keywords - Domaini

Leucine-rich repeatSAAS annotation, RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
OrthoDBiEOG779NXJ.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiIPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 3 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 10 hits.
SM00082. LRRCT. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 12 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q24250-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMIAFVGIWC ILASIGVEPA AGLANCPPGC QCDDNTLVVQ CGEGQLDVLP
60 70 80 90 100
IALNPSIQRL VIKSNKIKTI DSSIQFYAEL TFLDLSSNHL MTIPQRTFAY
110 120 130 140 150
QKKLQEVHLN HNKIGQISNK TFIGLSAVTV LNLRGNQISE LHQGTFTPLL
160 170 180 190 200
KIEELNLGEN RIGYLDPKAF DGLSQLRILY LDDNALTTVP DPVIFQAMPS
210 220 230 240 250
LAELFLGMNT LQSIQAGAFQ DLKGLTRLEL KGASLRNISH DSFLGLQELR
260 270 280 290 300
ILDLSDNRLD RIPSVGLSKL VRLEQLSLGQ NDFEVISEGA FMGLKQLKRL
310 320 330 340 350
EVNGALRLKR VMTGAFSDNG NLEYLNLSSN KMLLEVQEGA LSGLSQLKHV
360 370 380 390 400
VLKANALTSL AEGLFPWKDL QTLDLSENPL SCDCRVMWLH NLLVAKNASQ
410 420 430 440 450
DDVSELLCEF PERLRGESLR HLNPAMMGCT HADPRKQALI GALLVGSAAT
460 470 480 490 500
ITALALVLYR CRHKIRETIK GGLWGNSALG RKEREYQKTF CDEDYMSRHQ
510 520 530 540 550
HHPCSLGIHS TFPNTYTAPH HPGATHHYGM CPMPVNDLGA IDPQQKFQQL
560 570 580 590 600
VVPTATMISE KKLNNNKALV SQGAIDDSAS FVLHMKSATM GRDVHQQNPQ
610 620 630 640 650
LNHYTKPQFL SATATVGDSC YSYADVPMVH GAPLGGPNQP QLRLTQEHFK
660 670 680 690 700
QRELYDQEMG SEILDHNYIY SNTHYSMPLE QLGRSKTPTP PPMPPALPLR
710 720 730
NGLCATTGRR SFQQKSASQK QQQNNNTLRQ FTH
Length:733
Mass (Da):81,319
Last modified:November 1, 1996 - v1
Checksum:i4379181190B07E3B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U02078 mRNA. Translation: AAC47955.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U02078 mRNA. Translation: AAC47955.1.

3D structure databases

ProteinModelPortaliQ24250.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7227.FBpp0303108.

Proteomic databases

PaxDbiQ24250.
PRIDEiQ24250.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

FlyBaseiFBgn0010452. trn.

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
OrthoDBiEOG779NXJ.

Enzyme and pathway databases

ReactomeiR-DME-193634. Axonal growth inhibition (RHOA activation).

Miscellaneous databases

ChiTaRSitrn. fly.

Gene expression databases

BgeeiQ24250.
ExpressionAtlasiQ24250. differential.

Family and domain databases

Gene3Di3.80.10.10. 2 hits.
InterProiIPR000483. Cys-rich_flank_reg_C.
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 3 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 10 hits.
SM00082. LRRCT. 1 hit.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 12 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular and genetic characterization of the Drosophila tartan gene."
    Chang Z., Price B.D., Bockheim S., Boedigheimer M.J., Smith R., Laughon A.
    Dev. Biol. 160:315-332(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Canton SImported.

Entry informationi

Entry nameiQ24250_DROME
AccessioniPrimary (citable) accession number: Q24250
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.