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Protein
Submitted name:

Uncharacterized protein

Gene

rad-23

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-CEL-5696394. DNA Damage Recognition in GG-NER.
R-CEL-5696395. Formation of Incision Complex in GG-NER.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:rad-23Imported
ORF Names:CELE_ZK20.3Imported, ZK20.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiZK20.3; CE42949; WBGene00013924; rad-23.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiQ23451.
PaxDbiQ23451.

Expressioni

Gene expression databases

BgeeiWBGene00013924.

Interactioni

Protein-protein interaction databases

DIPiDIP-25917N.
IntActiQ23451. 8 interactions.
MINTiMINT-226728.
STRINGi6239.ZK20.3.1.

Structurei

3D structure databases

ProteinModelPortaliQ23451.
SMRiQ23451. Positions 3-323.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 8078Ubiquitin-likeInterPro annotationAdd
BLAST
Domaini127 – 16741UBAInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0011. Eukaryota.
COG5272. LUCA.
GeneTreeiENSGT00390000012078.
HOGENOMiHOG000172162.
InParanoidiQ23451.
KOiK10839.
OMAiPESIQQE.
OrthoDBiEOG091G0DVL.
PhylomeDBiQ23451.

Family and domain databases

Gene3Di1.10.10.540. 1 hit.
InterProiIPR004806. Rad23.
IPR006636. STI1_HS-bd.
IPR015940. UBA.
IPR009060. UBA-like.
IPR029071. Ubiquitin-rel_dom.
IPR000626. Ubiquitin_dom.
IPR015360. XPC-bd.
[Graphical view]
PfamiPF00627. UBA. 2 hits.
PF00240. ubiquitin. 1 hit.
PF09280. XPC-binding. 1 hit.
[Graphical view]
PRINTSiPR01839. RAD23PROTEIN.
SMARTiSM00727. STI1. 1 hit.
SM00165. UBA. 2 hits.
SM00213. UBQ. 1 hit.
[Graphical view]
SUPFAMiSSF101238. SSF101238. 1 hit.
SSF46934. SSF46934. 2 hits.
SSF54236. SSF54236. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q23451-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLSVTFRTL TQVNFNLELN EDQTIAEVKA LVASEKGDDY APELQKLIYN
60 70 80 90 100
GKILDDSVKV GEVGFDSSKF VVVMLSKRKV TEVAPSSTVA TAAEPVPVAA
110 120 130 140 150
APASNPAPAA DVAPEAAAPA EAEALTDEQE ENVLAITGMG YDREQTIAAL
160 170 180 190 200
RAAFWNPDRA VEFLLNGLPD DAADQEPDLG PEQNIDNVDE DGNDDLNMLA
210 220 230 240 250
NMPQLAEIRA LIQQNPEMLA AVLQQLAAVN PRLVQTIQNN QQAFMDLLNG
260 270 280 290 300
GAQGAGAAAG NAPERNTPRR HVIHLSPEEA AAIERIKAIV VNAPEAVVVE
310 320
AYFACDKNEE AAINFIFSNL DEE
Length:323
Mass (Da):34,567
Last modified:September 23, 2008 - v2
Checksum:i2C7886EB36D29477
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAA93780.2.
RefSeqiNP_496488.2. NM_064087.6.
UniGeneiCel.17166.

Genome annotation databases

EnsemblMetazoaiZK20.3.1; ZK20.3.1; WBGene00013924.
ZK20.3.2; ZK20.3.2; WBGene00013924.
GeneIDi174785.
KEGGicel:CELE_ZK20.3.
UCSCiZK20.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CAA93780.2.
RefSeqiNP_496488.2. NM_064087.6.
UniGeneiCel.17166.

3D structure databases

ProteinModelPortaliQ23451.
SMRiQ23451. Positions 3-323.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25917N.
IntActiQ23451. 8 interactions.
MINTiMINT-226728.
STRINGi6239.ZK20.3.1.

Proteomic databases

EPDiQ23451.
PaxDbiQ23451.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiZK20.3.1; ZK20.3.1; WBGene00013924.
ZK20.3.2; ZK20.3.2; WBGene00013924.
GeneIDi174785.
KEGGicel:CELE_ZK20.3.
UCSCiZK20.3. c. elegans.

Organism-specific databases

CTDi174785.
WormBaseiZK20.3; CE42949; WBGene00013924; rad-23.

Phylogenomic databases

eggNOGiKOG0011. Eukaryota.
COG5272. LUCA.
GeneTreeiENSGT00390000012078.
HOGENOMiHOG000172162.
InParanoidiQ23451.
KOiK10839.
OMAiPESIQQE.
OrthoDBiEOG091G0DVL.
PhylomeDBiQ23451.

Enzyme and pathway databases

ReactomeiR-CEL-5696394. DNA Damage Recognition in GG-NER.
R-CEL-5696395. Formation of Incision Complex in GG-NER.

Gene expression databases

BgeeiWBGene00013924.

Family and domain databases

Gene3Di1.10.10.540. 1 hit.
InterProiIPR004806. Rad23.
IPR006636. STI1_HS-bd.
IPR015940. UBA.
IPR009060. UBA-like.
IPR029071. Ubiquitin-rel_dom.
IPR000626. Ubiquitin_dom.
IPR015360. XPC-bd.
[Graphical view]
PfamiPF00627. UBA. 2 hits.
PF00240. ubiquitin. 1 hit.
PF09280. XPC-binding. 1 hit.
[Graphical view]
PRINTSiPR01839. RAD23PROTEIN.
SMARTiSM00727. STI1. 1 hit.
SM00165. UBA. 2 hits.
SM00213. UBQ. 1 hit.
[Graphical view]
SUPFAMiSSF101238. SSF101238. 1 hit.
SSF46934. SSF46934. 2 hits.
SSF54236. SSF54236. 1 hit.
PROSITEiPS50030. UBA. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ23451_CAEEL
AccessioniPrimary (citable) accession number: Q23451
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: September 23, 2008
Last modified: September 7, 2016
This is version 140 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.