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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

TTHERM_00392850

Organism
Tetrahymena thermophila (strain SB210)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
ORF Names:TTHERM_00392850Imported
OrganismiTetrahymena thermophila (strain SB210)Imported
Taxonomic identifieri312017 [NCBI]
Taxonomic lineageiEukaryotaAlveolataCiliophoraIntramacronucleataOligohymenophoreaHymenostomatidaTetrahymeninaTetrahymenidaeTetrahymena
ProteomesiUP000009168 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliQ233G4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiQ233G4.
KOiK10747.

Family and domain databases

Gene3Di2.20.140.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR008893. WGR_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q233G4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIKIDLTKPV FLNFNQSKFW EISLLDGNKS QIRYGKLVQG EEIEEKTQIV
60 70 80 90 100
QKQHKDTDSC LDYIIRVIEN KKLKGYSGDI PMKKNEPQII IPANNASGFS
110 120 130 140 150
IQISAPKSVE NNANDDKDSK VDSNTQAYLQ ENKTWSSQFV ILTLSGNEVE
160 170 180 190 200
EIIGKLGIKK TWEKSSTILS ANQCKLYFKN QIEEYERKGY VRDDSQYNFQ
210 220 230 240 250
LNEVNKHFSA QNGSSNNNQL DLNQKGKKKN FNKDSGLYDD SHSNISGISD
260 270 280 290 300
QSDLTARSGG SQLDLSFDKG DDDDGNSSVV VTGEIKKGSL GANGSMDSGV
310 320 330 340 350
LLAQAMPDEM DPTGWYASEK MDGVRAVWTG KTFYSRNGNE FYPPPFFIQN
360 370 380 390 400
FPNCTLDGEL FTKRDDFQRC VGIVKTKNGN EEKDERWKDI VYLVYDCPKL
410 420 430 440 450
LKPFKDRIKA LQEQIPKLGN KYIKVLPHKI VESREQLESE LDRVLKNNGE
460 470 480 490 500
GLMLRDPNSM YECRRSKTLL KVKTFTDEEA TVIGSERGEG RCADMMGALV
510 520 530 540 550
CRMKNGKEFK IGSGFNDDQR RRPPKKGSVI TFKYQNLTKD GKPRFPIFLR

IKEDE
Length:555
Mass (Da):63,068
Last modified:April 18, 2006 - v1
Checksum:i18799FAFAC545C87
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG662770 Genomic DNA. Translation: EAR91616.1.
RefSeqiXP_001011861.1. XM_001011861.1.

Genome annotation databases

EnsemblProtistsiEAR91616; EAR91616; TTHERM_00392850.
GeneIDi7847151.
KEGGitet:TTHERM_00392850.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GG662770 Genomic DNA. Translation: EAR91616.1.
RefSeqiXP_001011861.1. XM_001011861.1.

3D structure databases

ProteinModelPortaliQ233G4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEAR91616; EAR91616; TTHERM_00392850.
GeneIDi7847151.
KEGGitet:TTHERM_00392850.

Phylogenomic databases

InParanoidiQ233G4.
KOiK10747.

Family and domain databases

Gene3Di2.20.140.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR008893. WGR_domain.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote."
    Eisen J.A., Coyne R.S., Wu M., Wu D., Thiagarajan M., Wortman J.R., Badger J.H., Ren Q., Amedeo P., Jones K.M., Tallon L.J., Delcher A.L., Salzberg S.L., Silva J.C., Haas B.J., Majoros W.H., Farzad M., Carlton J.M.
    , Smith R.K. Jr., Garg J., Pearlman R.E., Karrer K.M., Sun L., Manning G., Elde N.C., Turkewitz A.P., Asai D.J., Wilkes D.E., Wang Y., Cai H., Collins K., Stewart B.A., Lee S.R., Wilamowska K., Weinberg Z., Ruzzo W.L., Wloga D., Gaertig J., Frankel J., Tsao C.-C., Gorovsky M.A., Keeling P.J., Waller R.F., Patron N.J., Cherry J.M., Stover N.A., Krieger C.J., del Toro C., Ryder H.F., Williamson S.C., Barbeau R.A., Hamilton E.P., Orias E.
    PLoS Biol. 4:1620-1642(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SB210Imported.

Entry informationi

Entry nameiQ233G4_TETTS
AccessioniPrimary (citable) accession number: Q233G4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: June 24, 2015
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.