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Protein

Ribosomal RNA-processing protein 7 homolog

Gene

ZC434.4

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA-processing protein 7 homolog
Gene namesi
ORF Names:ZC434.4
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiZC434.4; CE38014; WBGene00013892.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000654991 – 270Ribosomal RNA-processing protein 7 homologAdd BLAST270

Proteomic databases

EPDiQ23314.
PaxDbiQ23314.
PeptideAtlasiQ23314.
PRIDEiQ23314.

Expressioni

Gene expression databases

BgeeiWBGene00013892.

Interactioni

Protein-protein interaction databases

STRINGi6239.ZC434.4.1.

Structurei

3D structure databases

ProteinModelPortaliQ23314.
SMRiQ23314.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili233 – 268Sequence analysisAdd BLAST36

Sequence similaritiesi

Belongs to the RRP7 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG4008. Eukaryota.
ENOG410YHJN. LUCA.
HOGENOMiHOG000022049.
InParanoidiQ23314.
KOiK14545.
OMAiDLAYYTF.
OrthoDBiEOG091G0JTG.
PhylomeDBiQ23314.

Family and domain databases

InterProiView protein in InterPro
IPR024326. RRP7.
PANTHERiPTHR13191. PTHR13191. 1 hit.
PfamiView protein in Pfam
PF12923. RRP7. 1 hit.

Sequencei

Sequence statusi: Complete.

Q23314-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDCCKKKRVK KVAKRKSEKV IHLDPDALRY LRFRIGGKYM AERHMFLKKD
60 70 80 90 100
PSKENSIIVS NIPAFVGEGV VLAIIDQFAS FEVEESFVQR SNTADNSLSQ
110 120 130 140 150
GQLTMSITFD KPEAVIQTLA LCQDVGPFTI TDFLEDPEFP SVLKDSTTLY
160 170 180 190 200
RKLFPSEEQI QEMADTYVER YDTEQTEARK EAKRKYSEPD EDGWITVTKA
210 220 230 240 250
KKAAKSVKLK KEDVPLIGGL NNKKKKVDLA YYTFQIKKNR QEKAQELLKK
260 270
FEEDRKRITQ LKQARNFKPI
Length:270
Mass (Da):31,215
Last modified:May 10, 2005 - v3
Checksum:i73FDEC83040580F3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75714 Genomic DNA. Translation: CAB00064.2.
PIRiT27571.
RefSeqiNP_492709.2. NM_060308.5.
UniGeneiCel.16167.

Genome annotation databases

EnsemblMetazoaiZC434.4.1; ZC434.4.1; WBGene00013892.
ZC434.4.2; ZC434.4.2; WBGene00013892.
GeneIDi172902.
KEGGicel:CELE_ZC434.4.
UCSCiZC434.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75714 Genomic DNA. Translation: CAB00064.2.
PIRiT27571.
RefSeqiNP_492709.2. NM_060308.5.
UniGeneiCel.16167.

3D structure databases

ProteinModelPortaliQ23314.
SMRiQ23314.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.ZC434.4.1.

Proteomic databases

EPDiQ23314.
PaxDbiQ23314.
PeptideAtlasiQ23314.
PRIDEiQ23314.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiZC434.4.1; ZC434.4.1; WBGene00013892.
ZC434.4.2; ZC434.4.2; WBGene00013892.
GeneIDi172902.
KEGGicel:CELE_ZC434.4.
UCSCiZC434.4. c. elegans.

Organism-specific databases

CTDi172902.
WormBaseiZC434.4; CE38014; WBGene00013892.

Phylogenomic databases

eggNOGiKOG4008. Eukaryota.
ENOG410YHJN. LUCA.
HOGENOMiHOG000022049.
InParanoidiQ23314.
KOiK14545.
OMAiDLAYYTF.
OrthoDBiEOG091G0JTG.
PhylomeDBiQ23314.

Miscellaneous databases

PROiPR:Q23314.

Gene expression databases

BgeeiWBGene00013892.

Family and domain databases

InterProiView protein in InterPro
IPR024326. RRP7.
PANTHERiPTHR13191. PTHR13191. 1 hit.
PfamiView protein in Pfam
PF12923. RRP7. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRRP7_CAEEL
AccessioniPrimary (citable) accession number: Q23314
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 10, 2005
Last modified: March 15, 2017
This is version 92 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.