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Protein
Submitted name:

C.Elegans Chromodomain protein

Gene

cec-6

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Names & Taxonomyi

Protein namesi
Submitted name:
C.Elegans Chromodomain proteinImported
Gene namesi
Name:cec-6Imported
ORF Names:CELE_T12E12.2Imported, T12E12.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiT12E12.2; CE13585; WBGene00020463; cec-6.

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

EPDiQ22430.
PaxDbiQ22430.
PRIDEiQ22430.

Interactioni

Protein-protein interaction databases

IntActiQ22430. 4 interactions.
STRINGi6239.T12E12.2.

Structurei

3D structure databases

ProteinModelPortaliQ22430.
SMRiQ22430. Positions 36-83.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 9265ChromoInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili121 – 15232Sequence analysisAdd
BLAST
Coiled coili292 – 32635Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1911. Eukaryota.
ENOG4111JKD. LUCA.
HOGENOMiHOG000019198.
InParanoidiQ22430.
OMAiYPHILRC.
OrthoDBiEOG76HQ5B.

Family and domain databases

InterProiIPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
[Graphical view]
PfamiPF00385. Chromo. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 1 hit.
[Graphical view]
SUPFAMiSSF54160. SSF54160. 1 hit.
PROSITEiPS50013. CHROMO_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q22430-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSHDSSGEYM VSQVLKCVKF KDLVRKALNA EAKFSPASVE YDKRRHSKYA
60 70 80 90 100
YLVHWRGYDW KERTWEPEEN LENCEELQKF KERNNMSLDH LTFEHHYEHS
110 120 130 140 150
TWRRISLASE KCVTNRYLKT DDEIEEKRAR KKAKLEEQNR KEQAKNPHAS
160 170 180 190 200
AETEPAVKKK KIEGVGSRIP KISDREGAGT SGQSSSNVST PGITPLDNKT
210 220 230 240 250
PRMQKKSNEI GQASTPECAI ATLSIGTPQP SIIDSTYDQS DIANGSTSPQ
260 270 280 290 300
PQPVFKRKMN GQDVSDYSVH QGGTFSDGSA IEGSTSRESE DMDCTQETKK
310 320 330 340 350
ALQKAIESAR EECEEIEKTI KKYPLQVTSS RVVTGFSPAL TLRKFRRCQS
360 370 380 390 400
LEMLSDHFNN NAEMEIFGKN FENSVRLDAD AKPVVIKIYP QEQELFLTKQ
410 420 430 440 450
RKMPSLEMEQ LVYENLVKEN ANNIKIAMHN IRPDKNFAQL LECLSHAYSK
460 470 480 490 500
DDNIRFETIF NEGFPPSDEY DCRRFQAIVF LIAYCKHRLW KADPKGMAIV
510 520 530 540 550
EASDAVKEGE IREQQIICSD RHRKCAWLQV FLKLMPDRFK FLETSGQCYH
560 570 580 590 600
GWEGDDGPFR DDVFFHCMKY GAECQKRLFL DFNKPIGIQE ETVGDYSVDA
610 620 630 640 650
MHLLAVQYGN IQRIPSYLSI GGLDINALAT HLPTKRVMRL QHYLKVWIEA
660 670 680 690 700
HKSETTATED RKKYYRYLND VIRLTSESLE IFLENEVTKM IFSRMGGRWK
710 720 730 740 750
IRMDLTYPHI LRCSPLSNKS NGGDGTHQVL SCLFYPEAIG YRDGLENSKG
760 770 780 790 800
ADTEKIDELK TSQKRYKKMI EEGKGRLVLA LYRIDIEFRC NLAEKEQFSL
810 820 830 840 850
PKFTLIESDD GFKIEKLTLL RQTEGLTCYE ADIGMFEMTP FSSPGCRYFG
860 870 880 890
ISDKAHEKDL VVPGNAHIEM RAEVDQPISF VTQLFFIKKN V
Length:891
Mass (Da):102,431
Last modified:November 1, 1996 - v1
Checksum:iD2E89A2C65C82493
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD70523.1.
PIRiT29561.
RefSeqiNP_500828.1. NM_068427.4.
UniGeneiCel.7348.

Genome annotation databases

EnsemblMetazoaiT12E12.2; T12E12.2; WBGene00020463.
GeneIDi177338.
KEGGicel:CELE_T12E12.2.
UCSCiT12E12.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA. Translation: CCD70523.1.
PIRiT29561.
RefSeqiNP_500828.1. NM_068427.4.
UniGeneiCel.7348.

3D structure databases

ProteinModelPortaliQ22430.
SMRiQ22430. Positions 36-83.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ22430. 4 interactions.
STRINGi6239.T12E12.2.

Proteomic databases

EPDiQ22430.
PaxDbiQ22430.
PRIDEiQ22430.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT12E12.2; T12E12.2; WBGene00020463.
GeneIDi177338.
KEGGicel:CELE_T12E12.2.
UCSCiT12E12.2. c. elegans.

Organism-specific databases

CTDi177338.
WormBaseiT12E12.2; CE13585; WBGene00020463; cec-6.

Phylogenomic databases

eggNOGiKOG1911. Eukaryota.
ENOG4111JKD. LUCA.
HOGENOMiHOG000019198.
InParanoidiQ22430.
OMAiYPHILRC.
OrthoDBiEOG76HQ5B.

Family and domain databases

InterProiIPR000953. Chromo/shadow_dom.
IPR023780. Chromo_domain.
IPR016197. Chromodomain-like.
[Graphical view]
PfamiPF00385. Chromo. 1 hit.
[Graphical view]
SMARTiSM00298. CHROMO. 1 hit.
[Graphical view]
SUPFAMiSSF54160. SSF54160. 1 hit.
PROSITEiPS50013. CHROMO_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ22430_CAEEL
AccessioniPrimary (citable) accession number: Q22430
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.