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Protein
Submitted name:

Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor

Gene

Rfer_0120

Organism
Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciAFER338969:GHU9-120-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensorImported
Gene namesi
Ordered Locus Names:Rfer_0120Imported
OrganismiRhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)Imported
Taxonomic identifieri338969 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRhodoferax
Proteomesi
  • UP000008332 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei172 – 18918HelicalSequence analysisAdd
BLAST
Transmembranei195 – 21521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi338969.Rfer_0120.

Structurei

3D structure databases

ProteinModelPortaliQ223C2.
SMRiQ223C2. Positions 295-518.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 6036PAS (PER-ARNT-SIM)InterPro annotationAdd
BLAST
Domaini274 – 503230Methyl-accepting transducerInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105C8Q. Bacteria.
COG0840. LUCA.
HOGENOMiHOG000148074.
KOiK03776.
OMAiTVAEHIN.
OrthoDBiPOG091H0QRR.

Family and domain databases

InterProiIPR004090. Chemotax_Me-accpt_rcpt.
IPR004089. MCPsignal_dom.
IPR001610. PAC.
IPR000014. PAS.
IPR013655. PAS_fold_3.
[Graphical view]
PfamiPF00015. MCPsignal. 1 hit.
PF08447. PAS_3. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00283. MA. 1 hit.
SM00086. PAC. 1 hit.
[Graphical view]
SUPFAMiSSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50112. PAS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q223C2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRMNLPVTQR EFDYPAEHML VSTTDSKGFI THCNRAFVAV SGYTYDELIG
60 70 80 90 100
QNHNLIRHPD MPAAAFKDLW SSVGRGRPWT GMVKNRRADG DHYWVQANVT
110 120 130 140 150
PIMENGKPRG YMSVRIKPSR QEIKAAEGLY AQMNAAQESG KLPFHLQGGQ
160 170 180 190 200
VHYKGVRGMA GRIRRMTLTS RLGLALGFMI ALGMLPQWLD LQGMSGLGLK
210 220 230 240 250
LGSLLAGAAL VLLWFHKNFD TAMGEAGRFA DDLAGCNLTT SVATHFPPPL
260 270 280 290 300
DSLIRSLRQI QANLQAVVGD VRGEIASFTR SAAEIAAGSL NLSARTESQA
310 320 330 340 350
SSLQQTAASM EEISSTVRQT ADTAAQVSAQ SAISTRVATR GGEAMHQVGL
360 370 380 390 400
AMQAIESSST EVREIVDVIE GIAFQTNILA LNAAVEAARA GEQGRGFAVV
410 420 430 440 450
AAEVRALATR SAVAAKEIRT LIAQSVDQIS QVTQQMTGAG DTIDEVVQSV
460 470 480 490 500
RQVGELIQQI SNTTQEQSLG ISQVNEAVIQ LDAVTQQNAA LVEESAASAN
510
GLSDSAVTLA RSVQVFRLG
Length:519
Mass (Da):55,575
Last modified:April 18, 2006 - v1
Checksum:i332DBD03C4D10B4D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD67881.1.
RefSeqiWP_011462454.1. NC_007908.1.

Genome annotation databases

EnsemblBacteriaiABD67881; ABD67881; Rfer_0120.
KEGGirfr:Rfer_0120.
PATRICi23232693. VBIRhoFer131161_0374.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD67881.1.
RefSeqiWP_011462454.1. NC_007908.1.

3D structure databases

ProteinModelPortaliQ223C2.
SMRiQ223C2. Positions 295-518.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338969.Rfer_0120.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD67881; ABD67881; Rfer_0120.
KEGGirfr:Rfer_0120.
PATRICi23232693. VBIRhoFer131161_0374.

Phylogenomic databases

eggNOGiENOG4105C8Q. Bacteria.
COG0840. LUCA.
HOGENOMiHOG000148074.
KOiK03776.
OMAiTVAEHIN.
OrthoDBiPOG091H0QRR.

Enzyme and pathway databases

BioCyciAFER338969:GHU9-120-MONOMER.

Family and domain databases

InterProiIPR004090. Chemotax_Me-accpt_rcpt.
IPR004089. MCPsignal_dom.
IPR001610. PAC.
IPR000014. PAS.
IPR013655. PAS_fold_3.
[Graphical view]
PfamiPF00015. MCPsignal. 1 hit.
PF08447. PAS_3. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00283. MA. 1 hit.
SM00086. PAC. 1 hit.
[Graphical view]
SUPFAMiSSF55785. SSF55785. 1 hit.
TIGRFAMsiTIGR00229. sensory_box. 1 hit.
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50112. PAS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ223C2_RHOFT
AccessioniPrimary (citable) accession number: Q223C2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: September 7, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.