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Protein
Submitted name:

DeHydrogenases, Short chain

Gene

dhs-19

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

ReactomeiR-CEL-5365859. RA biosynthesis pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
DeHydrogenases, Short chainImported
Gene namesi
Name:dhs-19Imported
ORF Names:CELE_T11F9.11Imported, T11F9.11Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiT11F9.11; CE06423; WBGene00000982; dhs-19.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei7 – 27HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ22392.
PaxDbiQ22392.
PeptideAtlasiQ22392.

Expressioni

Gene expression databases

BgeeiWBGene00000982.

Interactioni

Protein-protein interaction databases

STRINGi6239.T11F9.11.

Structurei

3D structure databases

ProteinModelPortaliQ22392.
SMRiQ22392.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the short-chain dehydrogenases/reductases (SDR) family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG1201. Eukaryota.
COG1028. LUCA.
GeneTreeiENSGT00540000069900.
InParanoidiQ22392.
KOiK15734.
OMAiNYAVECI.
OrthoDBiEOG091G0825.
PhylomeDBiQ22392.

Family and domain databases

InterProiView protein in InterPro
IPR016040. NAD(P)-bd_dom.
IPR002347. SDR_fam.
PfamiView protein in Pfam
PF00106. adh_short. 1 hit.
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

Q22392-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRALDFVKM VVGTLFFIVL NFFKNFLPNG VLPRKSVEGK KVLITGSGSG
60 70 80 90 100
IGRLMALEFA KLGAEVVIWD VNKDGAEETK NQVVKAGGKA STFVVDLSQY
110 120 130 140 150
KDIHKVAKET KEAVGDIDIL INNAGIVTGK KLFDCPDELM EKTMAVNTNA
160 170 180 190 200
LFYTAKNFLP SMLEKDNGHL VTIASMAGKT GCVGLVDYCA SKHGAIGCHD
210 220 230 240 250
SIAMEILAQK KYGVNTTLVC PFFIDTGMFH GVTTKCPALF PILEANYAVE
260 270 280 290 300
CIVEAILTNR PLLCMPKASY LILALIGLLP IESQVMMADF FGTNESMNDF

KGRQKND
Length:307
Mass (Da):33,395
Last modified:November 1, 1996 - v1
Checksum:iB363226B6DB20628
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA98524.1.
PIRiT24832.
RefSeqiNP_505915.1. NM_073514.5.
UniGeneiCel.34303.

Genome annotation databases

EnsemblMetazoaiT11F9.11; T11F9.11; WBGene00000982.
GeneIDi179578.
KEGGicel:CELE_T11F9.11.
UCSCiT11F9.11. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAA98524.1.
PIRiT24832.
RefSeqiNP_505915.1. NM_073514.5.
UniGeneiCel.34303.

3D structure databases

ProteinModelPortaliQ22392.
SMRiQ22392.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.T11F9.11.

Proteomic databases

EPDiQ22392.
PaxDbiQ22392.
PeptideAtlasiQ22392.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT11F9.11; T11F9.11; WBGene00000982.
GeneIDi179578.
KEGGicel:CELE_T11F9.11.
UCSCiT11F9.11. c. elegans.

Organism-specific databases

CTDi179578.
WormBaseiT11F9.11; CE06423; WBGene00000982; dhs-19.

Phylogenomic databases

eggNOGiKOG1201. Eukaryota.
COG1028. LUCA.
GeneTreeiENSGT00540000069900.
InParanoidiQ22392.
KOiK15734.
OMAiNYAVECI.
OrthoDBiEOG091G0825.
PhylomeDBiQ22392.

Enzyme and pathway databases

ReactomeiR-CEL-5365859. RA biosynthesis pathway.

Gene expression databases

BgeeiWBGene00000982.

Family and domain databases

InterProiView protein in InterPro
IPR016040. NAD(P)-bd_dom.
IPR002347. SDR_fam.
PfamiView protein in Pfam
PF00106. adh_short. 1 hit.
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ22392_CAEEL
AccessioniPrimary (citable) accession number: Q22392
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 10, 2017
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.