Reviewed,
UniProtKB/Swiss-Prot Q22306 (YW12_CAEEL)
Last modified
December 15, 2009.
Version 57.
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Alternative products · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: UPF0046 protein T07D4.2 | ||
| Gene names |
| ||
| Organism | Caenorhabditis elegans [Complete proteome] | ||
| Taxonomic identifier | 6239 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis |
Protein attributes
| Sequence length | 396 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Molecular function | hydrolase activity Inferred from electronic annotation. Source: InterPro protein bindingInferred from physical interaction. Source: IntAct |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| Q22544 | 1 | EBI-311847,EBI-313477 | ||
| Q22756 | 1 | EBI-311847,EBI-327378 | ||
| Q23332 | 1 | EBI-311847,EBI-314953 | ||
| axl-1 | Q3LRZ3 | 1 | EBI-311847,EBI-327368 | |
| cat-4 | Q19980 | 2 | EBI-311847,EBI-311852 | |
| dyc-1 | Q8STF6 | 1 | EBI-311847,EBI-317594 | |
| dyf-3 | O44450 | 1 | EBI-311847,EBI-327358 | |
| rnf-1 | O01482 | 1 | EBI-311847,EBI-315611 |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform b (identifier: Q22306-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform a (identifier: Q22306-2) The sequence of this isoform differs from the canonical sequence as follows: 1-95: MLSPALLKVS...KKTRRKLSNP → MFSKSSNRFG...RESLVRELRT | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform c (identifier: Q22306-3) The sequence of this isoform differs from the canonical sequence as follows: 1-24: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Molecule processing | ||||||||
|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 396 | 396 | UPF0046 protein T07D4.2 | PRO_0000053410 | ||||
Natural variations | ||||||||
| Alternative sequence | 1 – 95 | 95 | MLSPA…KLSNP → MFSKSSNRFGTTSIFGDQSI KDEYRNRQRRLSLIGGPISG TSPNRRESLVRELRT in isoform a. | VSP_026508 | ||||
| Alternative sequence | 1 – 24 | 24 | Missing in isoform c. | VSP_026509 | ||||
Sequences
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References
| [1] | "Genome sequence of the nematode C. elegans: a platform for investigating biology." The C. elegans sequencing consortium Science 282:2012-2018(1998) [PubMed: 9851916] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], ALTERNATIVE SPLICING. Strain: Bristol N2. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| Z50071 Genomic DNA. Translation: CAA90405.3. Z50071 Genomic DNA. Translation: CAH04718.2. Z50071 Genomic DNA. Translation: CAL64000.2. | |
| PIR | T24660. |
| RefSeq | NP_001022323.2. NP_001022324.2. NP_001076633.1. |
| UniGene | Cel.14429 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| DIP | DIP-26139N. |
| IntAct | Q22306. 11 interactions. |
| STRING | Q22306. |
Genome annotation databases | |
| Ensembl | T07D4.2b; T07D4.2b; T07D4.2; Caenorhabditis elegans. [Genome view] |
| GeneID | 174416. |
| KEGG | cel:T07D4.2. |
| UCSC | T07D4.2b. c. elegans. |
Organism-specific databases | |
| CTD | 174416. |
| WormBase | WBGene00011579. T07D4.2. |
| WormPep | T07D4.2a. CE40620. [WorfDB] T07D4.2b. CE40621. [WorfDB] T07D4.2c. CE40622. [WorfDB] |
Phylogenomic databases | |
| HOGENOM | HBG385841. |
| InParanoid | Q22306. |
| OMA | DRREANI. |
Gene expression databases | |
| ArrayExpress | Q22306. |
Family and domain databases | |
| InterPro | IPR004843. M-pesterase. [Graphical view] |
| Pfam | PF00149. Metallophos. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 883930. |
Entry information
| Entry name | YW12_CAEEL | ||||||||
| Accession | Primary (citable) accession number: Q22306 Secondary accession number(s): A0FLR0, Q6BEU9 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | Caenorhabditis annotation project | ||||||||
Relevant documents
| Caenorhabditis elegans Caenorhabditis elegans: entries, gene names and cross-references to WormPep |
| SIMILARITY comments Index of protein domains and families |
| Uncharacterized protein families (UPF) List of uncharacterized protein family (UPF) entries |
