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Protein
Submitted name:

CDT (S. pombe CDC10 Dependent Transcript) homolog

Gene

cdt-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • proteasome-mediated ubiquitin-dependent protein catabolic process Source: WormBase
Complete GO annotation...

Enzyme and pathway databases

SignaLinkiQ22059.

Names & Taxonomyi

Protein namesi
Submitted name:
CDT (S. pombe CDC10 Dependent Transcript) homologImported
Gene namesi
Name:cdt-2Imported
ORF Names:CELE_T01C3.1Imported, T01C3.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiT01C3.1; CE42358; WBGene00011318; cdt-2.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: WormBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiQ22059.
PRIDEiQ22059.

Interactioni

Protein-protein interaction databases

STRINGi6239.T01C3.1.

Structurei

3D structure databases

ProteinModelPortaliQ22059.
SMRiQ22059. Positions 23-416.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini89 – 17789WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Keywords - Domaini

RepeatUniRule annotation

Phylogenomic databases

eggNOGiKOG0321. Eukaryota.
ENOG410XRWK. LUCA.
GeneTreeiENSGT00530000064210.
HOGENOMiHOG000019502.
InParanoidiQ22059.
KOiK11790.
OMAiNTHPLLA.
OrthoDBiEOG7W153G.
PhylomeDBiQ22059.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 2 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q22059-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFLHSTKAR KRYLRYPSSI YEELESKHYS MPAGETDDHD TWVTARFSPH
60 70 80 90 100
LNQEHILYMG DDPGNIGIFD VRKFQDRSVP LEERQLYFFP AHDGAIMDVV
110 120 130 140 150
GVPQKESQIV SISGDSTIRC WDLNQSTLDR KSQVFFGHEG SVRSICFAPD
160 170 180 190 200
DPNVFVTGGR DFQVKIWDMR VSTVKKMEED CRMATITYKT AHPKPSKVLT
210 220 230 240 250
SGTPKSKAKA KTIEGYKVTS VLFLDEHHVA SASENADSGI RVWDIRKPTR
260 270 280 290 300
NGEGQPARIL KVPTSNKKSY GVTCLTLDRF GNRLFASCTD SSIFEYSVPS
310 320 330 340 350
ESVSPINSYT GATIHNFYTQ VACSPVSDVI ACGSEDSRAV VWDLQDQYNY
360 370 380 390 400
MNDRKLPDDI DKRRTKLPRF SCDGHLKQVL NVGWSSRGTY FMSCDEGGVR
410 420 430 440 450
IWSEPRNRCT WKLNDEDDTS YPTTSQELGL SYEKIKKFEL KESDEAMSCF
460 470 480 490 500
DSISLSPRQR ADSSGLSGSP QKNRGSKRPI FESPLKSICT NSPKPLRLNR
510 520 530 540 550
SPRAKMSKLS FSPPSPLQPT NSNNQDLVGY RTPRQIRNKK KKNNPFYNEH
560 570 580 590 600
PTEGLPNFVY DTFVKKLIGE SSKSDIEDSG KSLSKTGQKR IEDWWQTKGE
610 620 630 640 650
NVATVTRARL PSVSEFGESA CSKVITEDER IALHSPRKLV LKSSSTQSPC
660 670 680
PSNSKPKPIP MTPRKPMDKR PTSRNLLHYF KK
Length:682
Mass (Da):77,142
Last modified:April 29, 2008 - v2
Checksum:i24A15CE803C7AE27
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB01663.2.
RefSeqiNP_506685.2. NM_074284.4.
UniGeneiCel.5901.

Genome annotation databases

EnsemblMetazoaiT01C3.1; T01C3.1; WBGene00011318.
GeneIDi179995.
KEGGicel:CELE_T01C3.1.
UCSCiT01C3.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA. Translation: CAB01663.2.
RefSeqiNP_506685.2. NM_074284.4.
UniGeneiCel.5901.

3D structure databases

ProteinModelPortaliQ22059.
SMRiQ22059. Positions 23-416.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.T01C3.1.

Proteomic databases

PaxDbiQ22059.
PRIDEiQ22059.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT01C3.1; T01C3.1; WBGene00011318.
GeneIDi179995.
KEGGicel:CELE_T01C3.1.
UCSCiT01C3.1. c. elegans.

Organism-specific databases

CTDi179995.
WormBaseiT01C3.1; CE42358; WBGene00011318; cdt-2.

Phylogenomic databases

eggNOGiKOG0321. Eukaryota.
ENOG410XRWK. LUCA.
GeneTreeiENSGT00530000064210.
HOGENOMiHOG000019502.
InParanoidiQ22059.
KOiK11790.
OMAiNTHPLLA.
OrthoDBiEOG7W153G.
PhylomeDBiQ22059.

Enzyme and pathway databases

SignaLinkiQ22059.

Miscellaneous databases

PROiQ22059.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 2 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 6 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiQ22059_CAEEL
AccessioniPrimary (citable) accession number: Q22059
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: April 29, 2008
Last modified: June 8, 2016
This is version 135 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.