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Protein

40S ribosomal protein S16

Gene

rps-16

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S16
Gene namesi
Name:rps-16
ORF Names:T01C3.6
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiT01C3.6; CE12918; WBGene00004485; rps-16.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001114882 – 14440S ribosomal protein S16Add BLAST143

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylthreonine1 Publication1

Keywords - PTMi

Acetylation

Proteomic databases

EPDiQ22054.
PaxDbiQ22054.
PeptideAtlasiQ22054.
PRIDEiQ22054.

Expressioni

Gene expression databases

BgeeiWBGene00004485.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
let-756Q111844EBI-3844009,EBI-3843983

Protein-protein interaction databases

BioGridi44994. 1 interactor.
IntActiQ22054. 1 interactor.
STRINGi6239.T01C3.6.1.

Structurei

3D structure databases

ProteinModelPortaliQ22054.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1753. Eukaryota.
COG0103. LUCA.
GeneTreeiENSGT00390000013067.
HOGENOMiHOG000019803.
InParanoidiQ22054.
KOiK02960.
OMAiHVSQIYA.
OrthoDBiEOG091G0QRW.
PhylomeDBiQ22054.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
InterProiView protein in InterPro
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR020574. Ribosomal_S9_CS.
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiView protein in Pfam
PF00380. Ribosomal_S9. 1 hit.
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiView protein in PROSITE
PS00360. RIBOSOMAL_S9. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q22054-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSTVQSVQT FGRKKTATAV AHCKKGQGLI KVNGRPLEFL EPQILRIKLQ
60 70 80 90 100
EPLLLVGKER FQDVDIRIRV SGGGHVAQIY AVRQALAKAL VAYYHKYVDE
110 120 130 140
QSKRELKNIF AAYDKSLLVA DPRRRESKKF GGPGARARYQ KSYR
Length:144
Mass (Da):16,316
Last modified:January 23, 2007 - v3
Checksum:i2406E2F8EEBF4A7D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z78413 Genomic DNA. Translation: CAB01658.1.
PIRiT24280.
RefSeqiNP_506690.1. NM_074289.5.
UniGeneiCel.23499.

Genome annotation databases

EnsemblMetazoaiT01C3.6.1; T01C3.6.1; WBGene00004485.
T01C3.6.2; T01C3.6.2; WBGene00004485.
GeneIDi179998.
KEGGicel:CELE_T01C3.6.
UCSCiT01C3.6.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z78413 Genomic DNA. Translation: CAB01658.1.
PIRiT24280.
RefSeqiNP_506690.1. NM_074289.5.
UniGeneiCel.23499.

3D structure databases

ProteinModelPortaliQ22054.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi44994. 1 interactor.
IntActiQ22054. 1 interactor.
STRINGi6239.T01C3.6.1.

Proteomic databases

EPDiQ22054.
PaxDbiQ22054.
PeptideAtlasiQ22054.
PRIDEiQ22054.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT01C3.6.1; T01C3.6.1; WBGene00004485.
T01C3.6.2; T01C3.6.2; WBGene00004485.
GeneIDi179998.
KEGGicel:CELE_T01C3.6.
UCSCiT01C3.6.2. c. elegans.

Organism-specific databases

CTDi179998.
WormBaseiT01C3.6; CE12918; WBGene00004485; rps-16.

Phylogenomic databases

eggNOGiKOG1753. Eukaryota.
COG0103. LUCA.
GeneTreeiENSGT00390000013067.
HOGENOMiHOG000019803.
InParanoidiQ22054.
KOiK02960.
OMAiHVSQIYA.
OrthoDBiEOG091G0QRW.
PhylomeDBiQ22054.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiPR:Q22054.

Gene expression databases

BgeeiWBGene00004485.

Family and domain databases

Gene3Di3.30.230.10. 1 hit.
InterProiView protein in InterPro
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR014721. Ribosomal_S5_D2-typ_fold_subgr.
IPR000754. Ribosomal_S9.
IPR020574. Ribosomal_S9_CS.
PANTHERiPTHR21569. PTHR21569. 1 hit.
PfamiView protein in Pfam
PF00380. Ribosomal_S9. 1 hit.
SUPFAMiSSF54211. SSF54211. 1 hit.
PROSITEiView protein in PROSITE
PS00360. RIBOSOMAL_S9. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS16_CAEEL
AccessioniPrimary (citable) accession number: Q22054
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 110 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.