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Q22000

- PDE4_CAEEL

UniProt

Q22000 - PDE4_CAEEL

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Protein
Probable 3',5'-cyclic phosphodiesterase pde-4
Gene
pde-4, R153.1
Organism
Caenorhabditis elegans
Status
Reviewed - Annotation score: 4 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Nucleoside 3',5'-cyclic phosphate + H2O = nucleoside 5'-phosphate.

Cofactori

Binds 2 divalent metal cations per subunit. Site 1 may preferentially bind zinc ions, while site 2 has a preference for magnesium and/or manganese ions By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei407 – 4071Proton donor By similarity
Metal bindingi411 – 4111Divalent metal cation 1 By similarity
Metal bindingi447 – 4471Divalent metal cation 1 By similarity
Metal bindingi448 – 4481Divalent metal cation 1 By similarity
Metal bindingi448 – 4481Divalent metal cation 2 By similarity
Metal bindingi565 – 5651Divalent metal cation 1 By similarity

GO - Molecular functioni

  1. 3',5'-cyclic-AMP phosphodiesterase activity Source: WormBase
  2. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. cAMP catabolic process Source: WormBase
  2. negative regulation of cAMP-mediated signaling Source: WormBase
  3. negative regulation of locomotion Source: WormBase
  4. signal transduction Source: InterPro
  5. sleep Source: WormBase
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Ligandi

cAMP, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Probable 3',5'-cyclic phosphodiesterase pde-4 (EC:3.1.4.17)
Gene namesi
Name:pde-4
ORF Names:R153.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940: Chromosome II

Organism-specific databases

WormBaseiR153.1a; CE02038; WBGene00020114; pde-4.
R153.1b; CE28641; WBGene00020114; pde-4.
R153.1c; CE32060; WBGene00020114; pde-4.
R153.1d; CE33438; WBGene00020114; pde-4.
R153.1e; CE33439; WBGene00020114; pde-4.
R153.1f; CE33440; WBGene00020114; pde-4.

Subcellular locationi

GO - Cellular componenti

  1. synapse Source: WormBase
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 674674Probable 3',5'-cyclic phosphodiesterase pde-4
PRO_0000198847Add
BLAST

Proteomic databases

PaxDbiQ22000.
PRIDEiQ22000.

Interactioni

Protein-protein interaction databases

STRINGi6239.R153.1d.

Structurei

3D structure databases

ProteinModelPortaliQ22000.
SMRiQ22000. Positions 340-658.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG122287.
GeneTreeiENSGT00660000095451.
HOGENOMiHOG000236297.
InParanoidiQ22000.
KOiK01120.
OMAiKASHINN.
PhylomeDBiQ22000.

Family and domain databases

Gene3Di1.10.1300.10. 1 hit.
InterProiIPR003607. HD/PDEase_dom.
IPR023088. PDEase.
IPR002073. PDEase_catalytic_dom.
IPR023174. PDEase_CS.
[Graphical view]
PfamiPF00233. PDEase_I. 1 hit.
[Graphical view]
PRINTSiPR00387. PDIESTERASE1.
SMARTiSM00471. HDc. 1 hit.
[Graphical view]
PROSITEiPS00126. PDEASE_I. 1 hit.
[Graphical view]

Sequences (6)i

Sequence statusi: Complete.

This entry describes 6 isoformsi produced by alternative splicing. Align

Isoform d (identifier: Q22000-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MPRRRGSSSS SSAAGGSGGG GGFGFSSLRR ELHLHNFFRT SSPSASSTSR    50
TPPAALPPRT SAVTIPGSNH KLTSSASSYH PPRELTVSTF SAGSATAADG 100
LGGAHLTPSL SSSVHARRES FLYRASDDLR EASSLRPVSR ASSIASNEHG 150
HGDDLIVTPF AQLLASLRNV RSNLISITNI QNSDDSRHAN RSAKRPPLHN 200
IELPDDVVHC AHDTLEELDW CLDQLETIQT HRSVSEMASS KFRKMLNKEL 250
SHFAESSKSG TQVSKFLITT YMDKEEDEPS IEIEVPTEVQ GPSTSGPMTL 300
SILKKAQTAA MNKISGVRKL RAPSHDGHVP EYGVNCAREI AVHMQRLDDW 350
GPDVFKIDEL SKNHSLTVVT FSLLRQRNLF KTFEIHQSTL VTYLLNLEHH 400
YRNNHYHNFI HAADVAQSMH VLLMSPVLTE VFTDLEVLAA IFAGAVHDVD 450
HPGFTNQYLI NSNNELAIMY NDESVLEQHH LAVAFKLLQD SNCDFLANLS 500
RKQRLQFRKI VIDMVLATDM SKHMSLLADL KTMVEAKKVA GNNVIVLDKY 550
NDKIQVLQSM IHLADLSNPT KPIELYQQWN QRIMEEYWRQ GDKEKELGLE 600
ISPMCDRGNV TIEKSQVGFI DYIVHPLYET WADLVYPDAQ NILDQLEENR 650
EWYQSRIPEE PDTARTVTED DEHK 674

Note: No experimental confirmation available.

Length:674
Mass (Da):75,389
Last modified:July 5, 2005 - v2
Checksum:i87BA310BE45DBD30
GO
Isoform a (identifier: Q22000-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-125: Missing.
     126-150: SDDLREASSLRPVSRASSIASNEHG → MSISLINNNNRSVRRKFGESGFTLR

Note: No experimental confirmation available.

Show »
Length:549
Mass (Da):62,904
Checksum:iDF2EE6F03925DE87
GO
Isoform b (identifier: Q22000-3) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-62: Missing.
     63-91: VTIPGSNHKLTSSASSYHPPRELTVSTFS → MNGVARRKQFKLRPWQSTALPSRHDHYSC

Note: No experimental confirmation available.

Show »
Length:612
Mass (Da):69,498
Checksum:i5E75F83B7D539255
GO
Isoform c (identifier: Q22000-4) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-75: Missing.
     76-90: ASSYHPPRELTVSTF → MTSRRHTVWFVPGSR

Note: No experimental confirmation available.

Show »
Length:599
Mass (Da):67,932
Checksum:i30F3EC75C7A51CA6
GO
Isoform e (identifier: Q22000-5) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-48: Missing.
     49-91: SRTPPAALPP...PRELTVSTFS → MCGSRRHLRR...LPSRHDHYSC

Note: No experimental confirmation available.

Show »
Length:626
Mass (Da):71,167
Checksum:i548A274EC8D470D6
GO
Isoform f (identifier: Q22000-6) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     151-158: HGDDLIVT → YVILYIFL
     159-674: Missing.

Note: No experimental confirmation available.

Show »
Length:158
Mass (Da):16,407
Checksum:i119F39EF1F6BEC58
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 125125Missing in isoform a.
VSP_014345Add
BLAST
Alternative sequencei1 – 7575Missing in isoform c.
VSP_014346Add
BLAST
Alternative sequencei1 – 6262Missing in isoform b.
VSP_014347Add
BLAST
Alternative sequencei1 – 4848Missing in isoform e.
VSP_014348Add
BLAST
Alternative sequencei49 – 9143SRTPP…VSTFS → MCGSRRHLRRNEDGMNGVAR RKQFKLRPWQSTALPSRHDH YSC in isoform e.
VSP_014349Add
BLAST
Alternative sequencei63 – 9129VTIPG…VSTFS → MNGVARRKQFKLRPWQSTAL PSRHDHYSC in isoform b.
VSP_014350Add
BLAST
Alternative sequencei76 – 9015ASSYH…TVSTF → MTSRRHTVWFVPGSR in isoform c.
VSP_014351Add
BLAST
Alternative sequencei126 – 15025SDDLR…SNEHG → MSISLINNNNRSVRRKFGES GFTLR in isoform a.
VSP_014352Add
BLAST
Alternative sequencei151 – 1588HGDDLIVT → YVILYIFL in isoform f.
VSP_014353
Alternative sequencei159 – 674516Missing in isoform f.
VSP_014354Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FO081170 Genomic DNA. Translation: CCD69643.1.
FO081170 Genomic DNA. Translation: CCD69647.1.
FO081170 Genomic DNA. Translation: CCD69649.1.
FO081170 Genomic DNA. Translation: CCD69644.1.
FO081170 Genomic DNA. Translation: CCD69648.1.
FO081170 Genomic DNA. Translation: CCD69645.1.
PIRiT16769.
RefSeqiNP_495600.1. NM_063199.3. [Q22000-5]
NP_495601.1. NM_063200.1. [Q22000-2]
NP_871944.1. NM_182144.3. [Q22000-4]
NP_871945.1. NM_182145.3. [Q22000-1]
NP_871946.1. NM_182146.3. [Q22000-3]
NP_871947.1. NM_182147.3. [Q22000-6]
UniGeneiCel.17824.

Genome annotation databases

EnsemblMetazoaiR153.1d; R153.1d; WBGene00020114. [Q22000-1]
GeneIDi174235.
KEGGicel:CELE_R153.1.
UCSCiR153.1b. c. elegans. [Q22000-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FO081170 Genomic DNA. Translation: CCD69643.1 .
FO081170 Genomic DNA. Translation: CCD69647.1 .
FO081170 Genomic DNA. Translation: CCD69649.1 .
FO081170 Genomic DNA. Translation: CCD69644.1 .
FO081170 Genomic DNA. Translation: CCD69648.1 .
FO081170 Genomic DNA. Translation: CCD69645.1 .
PIRi T16769.
RefSeqi NP_495600.1. NM_063199.3. [Q22000-5 ]
NP_495601.1. NM_063200.1. [Q22000-2 ]
NP_871944.1. NM_182144.3. [Q22000-4 ]
NP_871945.1. NM_182145.3. [Q22000-1 ]
NP_871946.1. NM_182146.3. [Q22000-3 ]
NP_871947.1. NM_182147.3. [Q22000-6 ]
UniGenei Cel.17824.

3D structure databases

ProteinModelPortali Q22000.
SMRi Q22000. Positions 340-658.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 6239.R153.1d.

Proteomic databases

PaxDbi Q22000.
PRIDEi Q22000.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai R153.1d ; R153.1d ; WBGene00020114 . [Q22000-1 ]
GeneIDi 174235.
KEGGi cel:CELE_R153.1.
UCSCi R153.1b. c. elegans. [Q22000-1 ]

Organism-specific databases

CTDi 174235.
WormBasei R153.1a ; CE02038 ; WBGene00020114 ; pde-4.
R153.1b ; CE28641 ; WBGene00020114 ; pde-4.
R153.1c ; CE32060 ; WBGene00020114 ; pde-4.
R153.1d ; CE33438 ; WBGene00020114 ; pde-4.
R153.1e ; CE33439 ; WBGene00020114 ; pde-4.
R153.1f ; CE33440 ; WBGene00020114 ; pde-4.

Phylogenomic databases

eggNOGi NOG122287.
GeneTreei ENSGT00660000095451.
HOGENOMi HOG000236297.
InParanoidi Q22000.
KOi K01120.
OMAi KASHINN.
PhylomeDBi Q22000.

Miscellaneous databases

NextBioi 883133.
PROi Q22000.

Family and domain databases

Gene3Di 1.10.1300.10. 1 hit.
InterProi IPR003607. HD/PDEase_dom.
IPR023088. PDEase.
IPR002073. PDEase_catalytic_dom.
IPR023174. PDEase_CS.
[Graphical view ]
Pfami PF00233. PDEase_I. 1 hit.
[Graphical view ]
PRINTSi PR00387. PDIESTERASE1.
SMARTi SM00471. HDc. 1 hit.
[Graphical view ]
PROSITEi PS00126. PDEASE_I. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], ALTERNATIVE SPLICING.
    Strain: Bristol N2.

Entry informationi

Entry nameiPDE4_CAEEL
AccessioniPrimary (citable) accession number: Q22000
Secondary accession number(s): Q86NE7
, Q86NE8, Q86NE9, Q8IFZ3, Q95ZQ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: July 5, 2005
Last modified: June 11, 2014
This is version 87 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi