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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Rfer_1436

Organism
Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAFER338969:GHU9-1443-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Rfer_1436Imported
OrganismiRhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)Imported
Taxonomic identifieri338969 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRhodoferax
ProteomesiUP000008332 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828 PotentialImportedAdd
BLAST
Chaini29 – 298270 PotentialImportedPRO_5000110311Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi338969.Rfer_1436.

Structurei

3D structure databases

ProteinModelPortaliQ21YI4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q21YI4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAHPFISRPF SCLTLLLGSV FSPGAFAVAD TTAVDTQDVS VSPPALMLAK
60 70 80 90 100
YWQSGVDPAA FLVSEKLDGV RAFWDGHTLR SRSGRRIAAP DWFTSALPAT
110 120 130 140 150
ALDGELWLGR GSFDRLSGMA RRNTPVDAEW RELRYMIFDL PGASDTFALR
160 170 180 190 200
VQRLNQVVAN ARQPWLQVVV QQRVPDAAAL QALLQQTVQN GGEGLVLHRT
210 220 230 240 250
NALWSPGRSD VLLKLKPMPD EEARVVAHLP GRGRNQGRMG ALLLEMSNGQ
260 270 280 290
RFALGTGFAD AQRADPPPVG SLVTYRYRDR TPKGLPRFAS FLRVRAPE
Length:298
Mass (Da):32,741
Last modified:April 18, 2006 - v1
Checksum:iF30A865D113B6533
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD69169.1.
RefSeqiWP_011463737.1. NC_007908.1.
YP_522700.1. NC_007908.1.

Genome annotation databases

EnsemblBacteriaiABD69169; ABD69169; Rfer_1436.
KEGGirfr:Rfer_1436.
PATRICi23235445. VBIRhoFer131161_1743.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD69169.1.
RefSeqiWP_011463737.1. NC_007908.1.
YP_522700.1. NC_007908.1.

3D structure databases

ProteinModelPortaliQ21YI4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338969.Rfer_1436.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD69169; ABD69169; Rfer_1436.
KEGGirfr:Rfer_1436.
PATRICi23235445. VBIRhoFer131161_1743.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciAFER338969:GHU9-1443-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M.
    , Kyrpides N., Ivanova N., Richardson P.
    Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-621 / DSM 15236 / T118Imported.

Entry informationi

Entry nameiQ21YI4_RHOFT
AccessioniPrimary (citable) accession number: Q21YI4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: May 27, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.