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Q21YI4

- Q21YI4_ALBFT

UniProt

Q21YI4 - Q21YI4_ALBFT

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Rfer_1436

Organism
Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Rhodoferax ferrireducens)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (18 Apr 2006)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciAFER338969:GHU9-1443-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Rfer_1436Imported
    OrganismiAlbidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Rhodoferax ferrireducens)Imported
    Taxonomic identifieri338969 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRhodoferax
    ProteomesiUP000008332: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2828 PotentialImportedAdd
    BLAST
    Chaini29 – 298270 PotentialImportedPRO_5000110311Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi338969.Rfer_1436.

    Structurei

    3D structure databases

    ProteinModelPortaliQ21YI4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiSLVTYRY.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q21YI4-1 [UniParc]FASTAAdd to Basket

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    MAHPFISRPF SCLTLLLGSV FSPGAFAVAD TTAVDTQDVS VSPPALMLAK    50
    YWQSGVDPAA FLVSEKLDGV RAFWDGHTLR SRSGRRIAAP DWFTSALPAT 100
    ALDGELWLGR GSFDRLSGMA RRNTPVDAEW RELRYMIFDL PGASDTFALR 150
    VQRLNQVVAN ARQPWLQVVV QQRVPDAAAL QALLQQTVQN GGEGLVLHRT 200
    NALWSPGRSD VLLKLKPMPD EEARVVAHLP GRGRNQGRMG ALLLEMSNGQ 250
    RFALGTGFAD AQRADPPPVG SLVTYRYRDR TPKGLPRFAS FLRVRAPE 298
    Length:298
    Mass (Da):32,741
    Last modified:April 18, 2006 - v1
    Checksum:iF30A865D113B6533
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000267 Genomic DNA. Translation: ABD69169.1.
    RefSeqiYP_522700.1. NC_007908.1.

    Genome annotation databases

    EnsemblBacteriaiABD69169; ABD69169; Rfer_1436.
    GeneIDi3963133.
    KEGGirfr:Rfer_1436.
    PATRICi23235445. VBIRhoFer131161_1743.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000267 Genomic DNA. Translation: ABD69169.1 .
    RefSeqi YP_522700.1. NC_007908.1.

    3D structure databases

    ProteinModelPortali Q21YI4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 338969.Rfer_1436.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABD69169 ; ABD69169 ; Rfer_1436 .
    GeneIDi 3963133.
    KEGGi rfr:Rfer_1436.
    PATRICi 23235445. VBIRhoFer131161_1743.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi SLVTYRY.
    OrthoDBi EOG60919Q.

    Enzyme and pathway databases

    BioCyci AFER338969:GHU9-1443-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
      Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M.
      , Kyrpides N., Ivanova N., Richardson P.
      Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-621 / DSM 15236 / T118Imported.

    Entry informationi

    Entry nameiQ21YI4_ALBFT
    AccessioniPrimary (citable) accession number: Q21YI4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 18, 2006
    Last sequence update: April 18, 2006
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3