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Q21YI4 (Q21YI4_RHOFD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Rfer_1436 EMBL ABD69169.1
OrganismRhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) [Complete proteome] [HAMAP] EMBL ABD69169.1
Taxonomic identifier338969 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAlbidiferax

Protein attributes

Sequence length298 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABD69169.1
   Molecular functionLigase EMBL ABD69169.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2828 Potential EMBL ABD69169.1
Chain29 – 298270 Potential EMBL ABD69169.1
PRO_5000110311

Sequences

Sequence LengthMass (Da)Tools
Q21YI4 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: F30A865D113B6533

FASTA29832,741
        10         20         30         40         50         60 
MAHPFISRPF SCLTLLLGSV FSPGAFAVAD TTAVDTQDVS VSPPALMLAK YWQSGVDPAA 

        70         80         90        100        110        120 
FLVSEKLDGV RAFWDGHTLR SRSGRRIAAP DWFTSALPAT ALDGELWLGR GSFDRLSGMA 

       130        140        150        160        170        180 
RRNTPVDAEW RELRYMIFDL PGASDTFALR VQRLNQVVAN ARQPWLQVVV QQRVPDAAAL 

       190        200        210        220        230        240 
QALLQQTVQN GGEGLVLHRT NALWSPGRSD VLLKLKPMPD EEARVVAHLP GRGRNQGRMG 

       250        260        270        280        290 
ALLLEMSNGQ RFALGTGFAD AQRADPPPVG SLVTYRYRDR TPKGLPRFAS FLRVRAPE 

« Hide

References

[1]"Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. expand/collapse author list , Kyrpides N., Ivanova N., Richardson P.
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15236 / ATCC BAA-621 / T118.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000267 Genomic DNA. Translation: ABD69169.1.
RefSeqYP_522700.1. NC_007908.1.

3D structure databases

ProteinModelPortalQ21YI4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING338969.Rfer_1436.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD69169; ABD69169; Rfer_1436.
GeneID3963133.
KEGGrfr:Rfer_1436.
PATRIC23235445. VBIRhoFer131161_1743.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAVRGYWDG.
OrthoDBEOG60919Q.
ProtClustDBPRK09125.

Enzyme and pathway databases

BioCycAFER338969:GHU9-1443-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ21YI4_RHOFD
AccessionPrimary (citable) accession number: Q21YI4
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: April 16, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)