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Q21YI4

- Q21YI4_ALBFT

UniProt

Q21YI4 - Q21YI4_ALBFT

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Rfer_1436
Organism
Albidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Rhodoferax ferrireducens)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciAFER338969:GHU9-1443-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Rfer_1436Imported
OrganismiAlbidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Rhodoferax ferrireducens)Imported
Taxonomic identifieri338969 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRhodoferax
ProteomesiUP000008332: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828 PredictedImported
Add
BLAST
Chaini29 – 298270 PredictedImported
PRO_5000110311Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi338969.Rfer_1436.

Structurei

3D structure databases

ProteinModelPortaliQ21YI4.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiSLVTYRY.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q21YI4-1 [UniParc]FASTAAdd to Basket

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MAHPFISRPF SCLTLLLGSV FSPGAFAVAD TTAVDTQDVS VSPPALMLAK    50
YWQSGVDPAA FLVSEKLDGV RAFWDGHTLR SRSGRRIAAP DWFTSALPAT 100
ALDGELWLGR GSFDRLSGMA RRNTPVDAEW RELRYMIFDL PGASDTFALR 150
VQRLNQVVAN ARQPWLQVVV QQRVPDAAAL QALLQQTVQN GGEGLVLHRT 200
NALWSPGRSD VLLKLKPMPD EEARVVAHLP GRGRNQGRMG ALLLEMSNGQ 250
RFALGTGFAD AQRADPPPVG SLVTYRYRDR TPKGLPRFAS FLRVRAPE 298
Length:298
Mass (Da):32,741
Last modified:April 18, 2006 - v1
Checksum:iF30A865D113B6533
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000267 Genomic DNA. Translation: ABD69169.1.
RefSeqiYP_522700.1. NC_007908.1.

Genome annotation databases

EnsemblBacteriaiABD69169; ABD69169; Rfer_1436.
GeneIDi3963133.
KEGGirfr:Rfer_1436.
PATRICi23235445. VBIRhoFer131161_1743.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000267 Genomic DNA. Translation: ABD69169.1 .
RefSeqi YP_522700.1. NC_007908.1.

3D structure databases

ProteinModelPortali Q21YI4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 338969.Rfer_1436.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABD69169 ; ABD69169 ; Rfer_1436 .
GeneIDi 3963133.
KEGGi rfr:Rfer_1436.
PATRICi 23235445. VBIRhoFer131161_1743.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi SLVTYRY.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci AFER338969:GHU9-1443-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M.
    , Kyrpides N., Ivanova N., Richardson P.
    Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-621 / DSM 15236 / T118.

Entry informationi

Entry nameiQ21YI4_ALBFT
AccessioniPrimary (citable) accession number: Q21YI4
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: June 11, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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