Cytochrome c oxidase, cbb3-type, subunit I - Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)

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Q21X47 (Q21X47_RHOFD) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 55. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Cytochrome c oxidase, cbb3-type, subunit I EMBL ABD69656.1

Gene names

Ordered Locus Names:

Rfer_1930 EMBL ABD69656.1

Organism

Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) [Complete proteome] [HAMAP] EMBL ABD69656.1

Taxonomic identifier

338969 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Albidiferax ›

Protein attributes

Sequence length	478 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the heme-copper respiratory oxidase family. RuleBase RU000370

Ontologies

Keywords
Biological process	Electron transport Respiratory chain RuleBase RU000370 Transport
Cellular component	Membrane
Domain	Transmembrane RuleBase RU000370
Ligand	Heme RuleBase RU000370 Iron Metal-binding
Molecular function	Oxidoreductase RuleBase RU000370
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	aerobic respiration Inferred from electronic annotation. Source: InterPro electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane respiratory chain complex IV Inferred from electronic annotation. Source: InterPro
Molecular_function	cytochrome-c oxidase activity Inferred from electronic annotation. Source: InterPro electron carrier activity Inferred from electronic annotation. Source: InterPro heme binding Inferred from electronic annotation. Source: InterPro iron ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q21X47 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: 03235B64BA471BAE
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FASTA

478

53,302

        10         20         30         40         50         60 
MAFSNTLATT YDDKVVRQFA VMTVVWGVVG MLVGVIIAAQ LAWPELNLGI SWLSYGRLRP 

        70         80         90        100        110        120 
LHTNAVIFAF GGCGLFAASY YVVQRTCQVR LFAGGLASFT FWAWQLVILS AAVSLPLGFT 

       130        140        150        160        170        180 
QGKEYAELEW PIDILITVVW VSYAIVFFGT VGTRKVRHIY VANWFFGAFI LAVALLHLVN 

       190        200        210        220        230        240 
SAAIPAGYMK SYSAYAGVQD AMVQWWYGHN AVGFFLTAGF LGMMYYFIPK QAERPVYSYR 

       250        260        270        280        290        300 
LSIVHFWALI FTYMWAGPHH LHYTALPDWT QSVGMVFSLI LLAPSWGGMI NGIMTLSGAW 

       310        320        330        340        350        360 
HKLRDDPILR FLIVSLSFYG MSTFEGPMMS IKTVNALSHY TDWTVGHVHS GALGWVGLVT 

       370        380        390        400        410        420 
MGSMYYLIPR LFGQKQMYSV KAIEVHFWTA TIGIVIYIAA MWIAGVMQGL MWRSINPDGT 

       430        440        450        460        470 
LTYTFVESVK ATFPFYVLRL LGGLLYLGGM LVMLWNTFKT ATNGRSVTVT IPAAVAHA

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References

[1]

"Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M.

Richardson P.
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15236 / ATCC BAA-621 / T118.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000267 Genomic DNA. Translation: ABD69656.1.
RefSeq	YP_523187.1. NC_007908.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	338969.Rfer_1930.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABD69656; ABD69656; Rfer_1930.
GeneID	3960768.
KEGG	rfr:Rfer_1930.
PATRIC	23236497. VBIRhoFer131161_2259.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3278.
HOGENOM	HOG000277908.
KO	K00404.
OMA	ITIVWVA.
ProtClustDB	PRK14488.
Enzyme and pathway databases
BioCyc	AFER338969:GHU9-1949-MONOMER.
Family and domain databases
Gene3D	1.20.210.10. 1 hit.
InterPro	IPR000883. Cyt_c_Oxase_su1. IPR023615. Cyt_c_Oxase_su1_BS. IPR023616. Cyt_c_Oxase_su1_dom. IPR004677. Cyt_c_oxidase_cbb3_su1. [Graphical view]
PANTHER	PTHR10422. PTHR10422. 1 hit.
Pfam	PF00115. COX1. 1 hit. [Graphical view]
SUPFAM	SSF81442. COX1. 1 hit.
TIGRFAMs	TIGR00780. ccoN. 1 hit.
PROSITE	PS50855. COX1. 1 hit. PS00077. COX1_CUB. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q21X47_RHOFD

Accession

Primary (citable) accession number: Q21X47

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2006
Last sequence update:	April 18, 2006
Last modified:	May 29, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info

Preferred order of sections

Names and origin

Protein attributes

General annotation (Comments)

Ontologies

Sequences

References

Cross-references

Sequence databases

3D structure databases

Protein-protein interaction databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Family and domain databases

Entry information