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Q21W90 (TYPH_ALBFT) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:Rfer_2241
OrganismAlbidiferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Rhodoferax ferrireducens) [Complete proteome] [HAMAP]
Taxonomic identifier338969 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRhodoferax

Protein attributes

Sequence length522 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 522522Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000314712

Sequences

Sequence LengthMass (Da)Tools
Q21W90 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: 713D9EC0997E943B

FASTA52256,346
        10         20         30         40         50         60 
MRKHTDKPQL ASKLVLRRVA IDTYRENVAY LHRDCAVYRA EGFQALSKVE VRANGRHILA 

        70         80         90        100        110        120 
TLNVVDDPNI VACNELGLSE DAFAQMAVID GQPASVSQAE PPQSIGALRR KLAGERLGRE 

       130        140        150        160        170        180 
DFLGIVRDIA ELHYSKIELS AFVVATNRDE LDREEVYFLT EAMVASGRTL NWHEPLVVDK 

       190        200        210        220        230        240 
HCIGGIPGNR SSMLVVPIVA AHGLLCPKTS SRAITSPAGT ADTMEVLAKV ELPVDQLADI 

       250        260        270        280        290        300 
VRTHRGCLAW GGAAHLSPAD DVLISVERPL AIDSPGQMVA SILSKKIAAG STHLVLDIPI 

       310        320        330        340        350        360 
GPSAKVRSMP EAQRLRRLFE YVAGRMHLSL DVVVTDGRQP IGNGIGPVLE ARDVMRVLEN 

       370        380        390        400        410        420 
DPRAPNDLRQ KSLRLAGRLI EFDPDVRGGD GFAIARDILD SGRALAKMNA IIAAQGAKPF 

       430        440        450        460        470        480 
DHNHPQLGAL TFDICASESG VVTGIDNLQV ARIARLAGAP KVIGAGIDLF HKLGEAVTSG 

       490        500        510        520 
EVLYRVHAGF QSDLDFARQA CAKSTGYTLG RAEDVPHVFT EF 

« Hide

References

[1]"Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. expand/collapse author list , Kyrpides N., Ivanova N., Richardson P.
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-621 / DSM 15236 / T118.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000267 Genomic DNA. Translation: ABD69963.1.
RefSeqYP_523494.1. NC_007908.1.

3D structure databases

ProteinModelPortalQ21W90.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING338969.Rfer_2241.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD69963; ABD69963; Rfer_2241.
GeneID3962042.
KEGGrfr:Rfer_2241.
PATRIC23237155. VBIRhoFer131161_2585.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OMACLIWGGH.
OrthoDBEOG61ZTGG.

Enzyme and pathway databases

BioCycAFER338969:GHU9-2263-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_ALBFT
AccessionPrimary (citable) accession number: Q21W90
Entry history
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: April 18, 2006
Last modified: June 11, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families