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Q21U19 (Q21U19_RHOFD) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Rfer_3023 EMBL ABD70734.1
OrganismRhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) [Complete proteome] [HAMAP] EMBL ABD70734.1
Taxonomic identifier338969 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAlbidiferax

Protein attributes

Sequence length537 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABD70734.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processchemotaxis

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functiontransmembrane signaling receptor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3737 Potential EMBL ABD70734.1
Chain38 – 537500 Potential EMBL ABD70734.1
PRO_5000110605

Sequences

Sequence LengthMass (Da)Tools
Q21U19 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: FB348E206387581A

FASTA53756,832
        10         20         30         40         50         60 
MFENIRITHR FIAVVVIFSA AMWTVIGVSY WGQVSARESI KTLHDGAMQP ALLADQSIDK 

        70         80         90        100        110        120 
IVQNRLQVLL AFQHAPDGPL ASVHEHATSV HTDAIAANRV EANRIFKLME SALASPEEKA 

       130        140        150        160        170        180 
VFEATQTSRA AWRDKLDQAV NAIQSNNFSP ATMTAFLKAS REEGEAAVKS LLVYRDYQVK 

       190        200        210        220        230        240 
KANEAYAAAQ SRFRTALIAF GLVILIAATP ATLLTFTLLT RMRHGFKLAN ETATAIAGGD 

       250        260        270        280        290        300 
LSHVVPHTGR DEIGDLLLHM DTMRSKLHHV IGQVRNGSDS IANASTEVAT GTLDLSRRTE 

       310        320        330        340        350        360 
EQASSLEKTA SASEELTSTV QANADNAAQA NQLAASASDV ASRGGAVVAQ VVDTMEAINT 

       370        380        390        400        410        420 
SSRKIVDIIA VIDGIAFQTN ILALNAAVEA ARAGEQGRGF AVVAAEVRSL AQRSAEAAKE 

       430        440        450        460        470        480 
IKTLISDSVQ KVGVGTAQVA QAGATMQEIV AGIQRVADIV GEIALASREQ SAGIAQINQA 

       490        500        510        520        530 
VTHLDGVTQQ NAALVEQTSA ASNALQDQAR ELAGLAASFK LEQYAGAGSS QALVRLR 

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References

[1]"Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. expand/collapse author list , Kyrpides N., Ivanova N., Richardson P.
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15236 / ATCC BAA-621 / T118.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000267 Genomic DNA. Translation: ABD70734.1.
RefSeqYP_524265.1. NC_007908.1.

3D structure databases

ProteinModelPortalQ21U19.
SMRQ21U19. Positions 298-523.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING338969.Rfer_3023.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD70734; ABD70734; Rfer_3023.
GeneID3960370.
KEGGrfr:Rfer_3023.
PATRIC23238793. VBIRhoFer131161_3392.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0840.
HOGENOMHOG000148074.
OMAENIRITH.
OrthoDBEOG6G4VQG.

Enzyme and pathway databases

BioCycAFER338969:GHU9-3062-MONOMER.

Family and domain databases

InterProIPR004090. Chemotax_Me-accpt_rcpt.
IPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
PRINTSPR00260. CHEMTRNSDUCR.
SMARTSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ21U19_RHOFD
AccessionPrimary (citable) accession number: Q21U19
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: February 19, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)