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Protein
Submitted name:

Methyl-accepting chemotaxis sensory transducer

Gene

Rfer_3119

Organism
Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. signal transducer activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciAFER338969:GHU9-3159-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Methyl-accepting chemotaxis sensory transducerImported
Gene namesi
Ordered Locus Names:Rfer_3119Imported
OrganismiRhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)Imported
Taxonomic identifieri338969 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRhodoferax
ProteomesiUP000008332: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3737 PotentialImportedAdd
BLAST
Chaini38 – 554517 PotentialImportedPRO_5000110625Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi338969.Rfer_3119.

Structurei

3D structure databases

ProteinModelPortaliQ21TS5.
SMRiQ21TS5. Positions 296-521.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000148074.
OMAiGIDSHAT.
OrthoDBiEOG6G4VQG.

Family and domain databases

InterProiIPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
[Graphical view]
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q21TS5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFKQFFKSMS LARRLSLGFT SILVLLLAVA LTSAYAIRLL GQHVQHIVEV
60 70 80 90 100
GNRKTELENK LMGSISDLAI RSRSVVLFTG KQLAIEIQSV KEAELSFLSI
110 120 130 140 150
EKELIALLAG GNATEQERQL MADISLAAKQ VLPETEGVVK QAMDADNVSA
160 170 180 190 200
VMSLMKRVLP PEVVLRRKVS ELIELQRKQT EIANGEVVSL QKKAMLVESG
210 220 230 240 250
LVLLALLLGG LIAWRITVSV TGPIGRAVVV AERIAMGDLS SQIEVRIFDE
260 270 280 290 300
TGRLLQAIAS MQNKLKTLVG GIRRAADSIE LASSEAACGN LDLSHRTEQA
310 320 330 340 350
ASSLQETAHS MEHLTGIVMQ SAESAKQANQ LASSAANVAA RGGSLVSEVV
360 370 380 390 400
STMDEINISS NKISDIITVI DGIAFQTNIL ALNAAVEAAR AGEQGRGFAV
410 420 430 440 450
VASEVRTLAG RSAQAAKEIK SLIGASVERV ERGTRLVADA GRTMTEIVTS
460 470 480 490 500
VQRVTDTLGE ITAAATEQSQ GIRRINTAIA SLDRMTQQNA ALVEEGTAAA
510 520 530 540 550
ESLKDQAAQL SVAVNTFKLD RLGDVAAPEI YRVSSGTAVK RLARDPAGHE

LQMA
Length:554
Mass (Da):59,003
Last modified:April 18, 2006 - v1
Checksum:i42ADF704733E51E6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD70828.1.
RefSeqiYP_524359.1. NC_007908.1.

Genome annotation databases

EnsemblBacteriaiABD70828; ABD70828; Rfer_3119.
GeneIDi3962132.
KEGGirfr:Rfer_3119.
PATRICi23238991. VBIRhoFer131161_3490.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD70828.1.
RefSeqiYP_524359.1. NC_007908.1.

3D structure databases

ProteinModelPortaliQ21TS5.
SMRiQ21TS5. Positions 296-521.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338969.Rfer_3119.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD70828; ABD70828; Rfer_3119.
GeneIDi3962132.
KEGGirfr:Rfer_3119.
PATRICi23238991. VBIRhoFer131161_3490.

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000148074.
OMAiGIDSHAT.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciAFER338969:GHU9-3159-MONOMER.

Family and domain databases

InterProiIPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
[Graphical view]
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M.
    , Kyrpides N., Ivanova N., Richardson P.
    Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-621 / DSM 15236 / T118Imported.

Entry informationi

Entry nameiQ21TS5_RHOFT
AccessioniPrimary (citable) accession number: Q21TS5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: February 4, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.