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Q21SE1 (Q21SE1_RHOFD) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Methyl-accepting chemotaxis sensory transducer EMBL ABD71312.1
Gene names
Ordered Locus Names:Rfer_3609 EMBL ABD71312.1
OrganismRhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) [Complete proteome] [HAMAP] EMBL ABD71312.1
Taxonomic identifier338969 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Albidiferax ›

Protein attributes

Sequence length596 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABD71312.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processchemotaxis

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintegral to membrane

Inferred from electronic annotation. Source: InterPro

   Molecular_functiontransmembrane signaling receptor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3232 Potential EMBL ABD71312.1
Chain33 – 596564 Potential
PRO_5000110740

Sequences

Sequence LengthMass (Da)Tools
Q21SE1 [UniParc].

Last modified April 18, 2006. Version 1.
Checksum: DF89DFA7065C5F0E

FASTA59662,555
        10         20         30         40         50         60 
MNRLKISTRL ALLIGVLAML LVLTGSIGLY GMGKSDEAMD IAYKDSTVQI ANIGNIKYLM 

        70         80         90        100        110        120 
LRNRLMIANA VIEQTPESIK RAGDEVEADI AKISKIWDVY LVGPKSSEEA QLAKAYADKR 

       130        140        150        160        170        180 
AQYVQEGLRP AVAALQANEL PTTRQLVVEK IRPAFDAARD AADALQKFQL DEAKKGFEAN 

       190        200        210        220        230        240 
SDRYHTIRAV CIAAIALGLL FAAWFGWMLA RGIANPLARA VKISEAVAQG DLSQTIRVTN 

       250        260        270        280        290        300 
GTDEISALMR GFAHMQTSLA SVVTNVRRGS EGVATASAEI AQGNSDLSSR TESQASALEE 

       310        320        330        340        350        360 
TAASMEQLSS TVKANADNAR QANQLALSAS TVAVQGGEVV AQVVDTMKGI NDASRKISDI 

       370        380        390        400        410        420 
ISVIDGIAFQ TNILALNAAV EAARAGEQGR GFAVVASEVR SLAGRSAEAA KEIKSLINAN 

       430        440        450        460        470        480 
VEHVEQGTLL VDKAGSTMTE VVSAIKRVTD IMGEISAASN EQSLGVTQVG EAVTQMDQVT 

       490        500        510        520        530        540 
QQNAALVEEM AAAASSLKVQ AQELVQVVAV FKLSANDAQQ GMATMAAVRS HKPGAVPFKG 

       550        560        570        580        590 
EERRGAGIPK GAAARSRTSS PASQAPSTTP TLLSARAAPP KAAPAAAGAE GDWETF

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References

[1]"Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. expand/collapse author list , Kyrpides N., Ivanova N., Richardson P.
Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15236 / ATCC BAA-621 / T118.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000267 Genomic DNA. Translation: ABD71312.1.
RefSeqYP_524843.1. NC_007908.1.

3D structure databases

ProteinModelPortalQ21SE1.
SMRQ21SE1. Positions 290-513.
ModBaseSearch...

Protein-protein interaction databases

STRING338969.Rfer_3609.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABD71312; ABD71312; Rfer_3609.
GeneID3962624.
KEGGrfr:Rfer_3609.
PATRIC23240023. VBIRhoFer131161_4001.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0840.
HOGENOMHOG000148074.
KOK05874.
OMAINANVEH.
ProtClustDBCLSK951789.

Enzyme and pathway databases

BioCycAFER338969:GHU9-3668-MONOMER.

Family and domain databases

InterProIPR004090. Chemotax_Me-accpt_rcpt.
IPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
PRINTSPR00260. CHEMTRNSDUCR.
SMARTSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ21SE1_RHOFD
AccessionPrimary (citable) accession number: Q21SE1
Entry history
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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