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Protein
Submitted name:

Methyl-accepting chemotaxis sensory transducer

Gene

Rfer_3609

Organism
Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. transmembrane signaling receptor activity Source: InterPro

GO - Biological processi

  1. chemotaxis Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciAFER338969:GHU9-3657-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Methyl-accepting chemotaxis sensory transducerImported
Gene namesi
Ordered Locus Names:Rfer_3609Imported
OrganismiRhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118) (Albidiferax ferrireducens)Imported
Taxonomic identifieri338969 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeRhodoferax
ProteomesiUP000008332: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. integral component of membrane Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3232 PotentialImportedAdd
BLAST
Chaini33 – 596564 PotentialImportedPRO_5000110740Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi338969.Rfer_3609.

Structurei

3D structure databases

ProteinModelPortaliQ21SE1.
SMRiQ21SE1. Positions 290-513.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000148074.
KOiK05874.
OMAiINANVEH.
OrthoDBiEOG6G4VQG.

Family and domain databases

InterProiIPR004090. Chemotax_Me-accpt_rcpt.
IPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q21SE1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNRLKISTRL ALLIGVLAML LVLTGSIGLY GMGKSDEAMD IAYKDSTVQI
60 70 80 90 100
ANIGNIKYLM LRNRLMIANA VIEQTPESIK RAGDEVEADI AKISKIWDVY
110 120 130 140 150
LVGPKSSEEA QLAKAYADKR AQYVQEGLRP AVAALQANEL PTTRQLVVEK
160 170 180 190 200
IRPAFDAARD AADALQKFQL DEAKKGFEAN SDRYHTIRAV CIAAIALGLL
210 220 230 240 250
FAAWFGWMLA RGIANPLARA VKISEAVAQG DLSQTIRVTN GTDEISALMR
260 270 280 290 300
GFAHMQTSLA SVVTNVRRGS EGVATASAEI AQGNSDLSSR TESQASALEE
310 320 330 340 350
TAASMEQLSS TVKANADNAR QANQLALSAS TVAVQGGEVV AQVVDTMKGI
360 370 380 390 400
NDASRKISDI ISVIDGIAFQ TNILALNAAV EAARAGEQGR GFAVVASEVR
410 420 430 440 450
SLAGRSAEAA KEIKSLINAN VEHVEQGTLL VDKAGSTMTE VVSAIKRVTD
460 470 480 490 500
IMGEISAASN EQSLGVTQVG EAVTQMDQVT QQNAALVEEM AAAASSLKVQ
510 520 530 540 550
AQELVQVVAV FKLSANDAQQ GMATMAAVRS HKPGAVPFKG EERRGAGIPK
560 570 580 590
GAAARSRTSS PASQAPSTTP TLLSARAAPP KAAPAAAGAE GDWETF
Length:596
Mass (Da):62,555
Last modified:April 18, 2006 - v1
Checksum:iDF89DFA7065C5F0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD71312.1.
RefSeqiYP_524843.1. NC_007908.1.

Genome annotation databases

EnsemblBacteriaiABD71312; ABD71312; Rfer_3609.
GeneIDi3962624.
KEGGirfr:Rfer_3609.
PATRICi23240023. VBIRhoFer131161_4001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000267 Genomic DNA. Translation: ABD71312.1.
RefSeqiYP_524843.1. NC_007908.1.

3D structure databases

ProteinModelPortaliQ21SE1.
SMRiQ21SE1. Positions 290-513.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338969.Rfer_3609.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD71312; ABD71312; Rfer_3609.
GeneIDi3962624.
KEGGirfr:Rfer_3609.
PATRICi23240023. VBIRhoFer131161_4001.

Phylogenomic databases

eggNOGiCOG0840.
HOGENOMiHOG000148074.
KOiK05874.
OMAiINANVEH.
OrthoDBiEOG6G4VQG.

Enzyme and pathway databases

BioCyciAFER338969:GHU9-3657-MONOMER.

Family and domain databases

InterProiIPR004090. Chemotax_Me-accpt_rcpt.
IPR003122. Chemotax_Me-accpt_rcpt_lig-bd.
IPR003660. HAMP_linker_domain.
IPR004089. MCPsignal_dom.
[Graphical view]
PfamiPF00672. HAMP. 1 hit.
PF00015. MCPsignal. 1 hit.
PF02203. TarH. 1 hit.
[Graphical view]
PRINTSiPR00260. CHEMTRNSDUCR.
SMARTiSM00304. HAMP. 1 hit.
SM00283. MA. 1 hit.
[Graphical view]
PROSITEiPS50111. CHEMOTAXIS_TRANSDUC_2. 1 hit.
PS50885. HAMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M.
    , Kyrpides N., Ivanova N., Richardson P.
    Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-621 / DSM 15236 / T118Imported.

Entry informationi

Entry nameiQ21SE1_RHOFT
AccessioniPrimary (citable) accession number: Q21SE1
Entry historyi
Integrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: February 4, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.