Q21RM5 (Q21RM5_RHOFD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL ABD71578.1

Gene names

Ordered Locus Names:

Rfer_3879

Organism

Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) [Complete proteome] [HAMAP]

Taxonomic identifier

338969 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Comamonadaceae › Albidiferax

Protein attributes

Sequence length	239 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. PIRSR PIRSR004848-1
Sequence similarities	Belongs to the UPF0001 family. RuleBase RU004514

Ontologies

Keywords
Ligand	Pyridoxal phosphate PIRSR PIRSR004848-1
Technical term	Complete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Amino acid modifications
	Modified residue	40	1	N6-(pyridoxal phosphate)lysine By similarity PIRSR PIRSR004848-1

Sequences

	Sequence		Length	Mass (Da)
	Q21RM5 [UniParc]. Last modified April 18, 2006. Version 1. Checksum: 80B9967D14F01738	FASTA	239	25,629
	10 20 30 40 50 60 MTTNQKQLQT QLQSVRARVT TACQAAGRAA SEVTLLAVSK TVAPEIVTQA FEAGQRAFGE 70 80 90 100 110 120 NYIQEAVEKI SHLRHLPLEW HCIGPIQSNK TRLVAEHFDW VQTLDRLKIA QRLSDQRPAG 130 140 150 160 170 180 RPPLQVCIQV NVDGGASKSG VSPSEALALA QRVAELPNLR LRGIMSIPEP TPDFVAACAL 190 200 210 220 230 FARVKAVFDA LNAEGLALDT LSMGMSADME AAIQSGSTMV RVGTAIFGGR PPIKSGIAH

References

[1]

"Complete sequence of chromosome of Rhodoferax ferrireducens DSM 15236." Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Kiss H., Schmutz J., Larimer F., Land M. , Kyrpides N., Ivanova N., Richardson P. Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000267 Genomic DNA. Translation: ABD71578.1.
RefSeq	YP_525109.1. NC_007908.1.
3D structure databases
ProteinModelPortal	Q21RM5.
SMR	Q21RM5. Positions 8-229.
ModBase	Search...
Protein-protein interaction databases
STRING	Q21RM5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3961481.
GenomeReviews	Gene locus Rfer_3879 in contig CP000267_GR.
KEGG	rfr:Rfer_3879.
NMPDR	fig|338969.3.peg.4064.
PATRIC	23240611. VBIRhoFer131161_4285.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0325.
HOGENOM	HBG289671.
OMA	HGSTMVR.
PhylomeDB	Q21RM5.
Enzyme and pathway databases
BioCyc	RFER338969:RFER_3879-MONOMER.
Family and domain databases
InterPro	IPR001608. Ala_racemase_N. IPR011078. UPF0001. [Graphical view]
KO	K06997.
PANTHER	PTHR10146. PP_YBL036C. 1 hit.
Pfam	PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PIRSF	PIRSF004848. YBL036c_PLPDEIII. 1 hit.
TIGRFAMs	TIGR00044. TIGR00044. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q21RM5_RHOFD

Accession

Primary (citable) accession number: Q21RM5

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2006
Last sequence update:	April 18, 2006
Last modified:	December 14, 2011
This is version 31 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)