Q21PI9 (Q21PI9_SACD2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
23S rRNA (Uracil-5-)-methyltransferase RumA EMBL ABD79390.1
EC=2.1.1.- EMBL ABD79390.1

Gene names

Ordered Locus Names:

Sde_0126

Organism

Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) [Complete proteome] [HAMAP] EMBL ABD79390.1

Taxonomic identifier

203122 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Saccharophagus › Saccharophagus degradans

Protein attributes

Sequence length	408 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Methyltransferase EMBL ABD79390.1 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	RNA methylation Inferred from electronic annotation. Source: GOC RNA processing Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA methyltransferase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q21PI9 [UniParc]. Last modified April 18, 2006. Version 1. Checksum: BE07DB9E098B851E	FASTA	408	44,507
	10 20 30 40 50 60 MVNAIFPKKR GAGRRKQGAS NRDAEQNFSR EPFTAEVVDM ASDGRGVIHH PEGRTCFVSG 70 80 90 100 110 120 VWLGEKGTFR LTEIKGRTGS AEVVELTQVA PQKITAPCVY HGHSAKHCGG CAWQSIEYSA 130 140 150 160 170 180 QLQAKQTRVE KALANLCKPD AIAPILGAER TEGYRNRAQF KTDGSKLGYV APSSNNIVDV 190 200 210 220 230 240 ETCLVLTPHN AATLANLRQQ LPNSEWQPKR KEPWVTLNID ETHSADEVRV NERLPFMQAN 250 260 270 280 290 300 SSQNKLMQDW LAERLARVDL ANPAIELFCG SGNFTEVIAA AGFPAVAAVE VEGDALSALQ 310 320 330 340 350 360 AKALTNVSVH GINLYEEGGL ENALKTQPKA KTLVLDPPRD GLKERAALLK KSCKIRDILY 370 380 390 400 ISCDLATFTR DITDLCGAGY KLVAVQPVDQ FPHTPHVEIL AHLRVKGG

References

[1]

"Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T." Weiner R.M., Taylor L.E. II, Henrissat B., Hauser L., Land M., Coutinho P.M., Rancurel C., Saunders E.H., Longmire A.G., Zhang H., Bayer E.A., Gilbert H.J., Larimer F., Zhulin I.B., Ekborg N.A., Lamed R., Richardson P.M., Borovok I., Hutcheson S. PLoS Genet. 4:E1000087-E1000087(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 2-40 / ATCC 43961 / DSM 17024.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000282 Genomic DNA. Translation: ABD79390.1.
RefSeq	YP_525602.1. NC_007912.1.
3D structure databases
ProteinModelPortal	Q21PI9.
ModBase	Search...
Protein-protein interaction databases
STRING	203122.Sde_0126.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABD79390; ABD79390; Sde_0126.
GeneID	3967580.
KEGG	sde:Sde_0126.
PATRIC	23398861. VBISacDeg56404_0139.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2265.
HOGENOM	HOG000125694.
OMA	HCIARTS.
ProtClustDB	CLSK421057.
Enzyme and pathway databases
BioCyc	SDEG203122:GI2M-135-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012340. NA-bd_OB-fold. IPR010280. U5_MeTrfase. [Graphical view]
Pfam	PF05958. tRNA_U5-meth_tr. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS01230. TRMA_1. 1 hit. PS01231. TRMA_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q21PI9_SACD2

Accession

Primary (citable) accession number: Q21PI9

Entry history

Integrated into UniProtKB/TrEMBL:	April 18, 2006
Last sequence update:	April 18, 2006
Last modified:	May 1, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)